Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RBI06_RS10350 Genome accession   NZ_CP133093
Coordinates   2246206..2246841 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2241206..2251841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI06_RS10335 (RBI06_10335) - 2241915..2243159 (+) 1245 WP_019485501.1 lipoprotein-releasing ABC transporter permease subunit -
  RBI06_RS10340 (RBI06_10340) - 2243244..2243777 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  RBI06_RS10345 (RBI06_10345) comA 2243908..2246133 (+) 2226 WP_019485500.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RBI06_RS10350 (RBI06_10350) exbB 2246206..2246841 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RBI06_RS10355 (RBI06_10355) - 2246838..2247278 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  RBI06_RS10360 (RBI06_10360) lpxK 2247278..2248276 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  RBI06_RS10365 (RBI06_10365) - 2248314..2248499 (+) 186 WP_003091157.1 Trm112 family protein -
  RBI06_RS10370 (RBI06_10370) kdsB 2248499..2249263 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RBI06_RS10375 (RBI06_10375) - 2249263..2249727 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  RBI06_RS10380 (RBI06_10380) murB 2249724..2250743 (+) 1020 WP_019485499.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=871840 RBI06_RS10350 WP_003091163.1 2246206..2246841(+) (exbB) [Pseudomonas aeruginosa strain 002]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=871840 RBI06_RS10350 WP_003091163.1 2246206..2246841(+) (exbB) [Pseudomonas aeruginosa strain 002]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81