Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU00_RS01420 Genome accession   NZ_CP148427
Coordinates   240455..241084 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323CEC0013     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 235455..246084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU00_RS01405 (WHU00_01405) helD 235697..237751 (-) 2055 WP_001295354.1 DNA helicase IV -
  WHU00_RS01410 (WHU00_01410) yccF 237874..238320 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHU00_RS01415 (WHU00_01415) yccS 238330..240492 (+) 2163 WP_000875061.1 YccS family putative transporter -
  WHU00_RS01420 (WHU00_01420) sxy/tfoX 240455..241084 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU00_RS01425 (WHU00_01425) sulA 241303..241812 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU00_RS01430 (WHU00_01430) ompA 242169..243209 (+) 1041 WP_000750416.1 porin OmpA -
  WHU00_RS01435 (WHU00_01435) matP 243285..243737 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU00_RS01440 (WHU00_01440) ycbZ 243923..245683 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=871827 WHU00_RS01420 WP_000839153.1 240455..241084(-) (sxy/tfoX) [Escherichia coli strain Z1323CEC0013]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=871827 WHU00_RS01420 WP_000839153.1 240455..241084(-) (sxy/tfoX) [Escherichia coli strain Z1323CEC0013]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1