Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RBH91_RS18855 Genome accession   NZ_CP133085
Coordinates   3771378..3771662 (-) Length   94 a.a.
NCBI ID   WP_076760941.1    Uniprot ID   A0A1R1S0G6
Organism   Bacillus swezeyi strain EA208     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3766378..3776662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS18835 smpB 3767173..3767646 (-) 474 WP_307892525.1 SsrA-binding protein SmpB -
  RBH91_RS18840 rnr 3767763..3770075 (-) 2313 WP_307892526.1 ribonuclease R -
  RBH91_RS18845 - 3770089..3770835 (-) 747 WP_076760847.1 carboxylesterase -
  RBH91_RS18850 secG 3770976..3771206 (-) 231 WP_076760848.1 preprotein translocase subunit SecG -
  RBH91_RS18855 abrB 3771378..3771662 (-) 285 WP_076760941.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RBH91_RS18860 - 3771692..3771925 (-) 234 WP_164470226.1 helix-turn-helix transcriptional regulator -
  RBH91_RS18865 - 3772078..3772479 (+) 402 WP_076760942.1 helix-turn-helix domain-containing protein -
  RBH91_RS18870 - 3772640..3773038 (+) 399 WP_076760849.1 helix-turn-helix domain-containing protein -
  RBH91_RS18875 - 3773088..3773765 (-) 678 WP_307892527.1 ABC transporter permease -
  RBH91_RS18880 opuCC 3773785..3774702 (-) 918 WP_307892528.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  RBH91_RS18885 - 3774716..3775369 (-) 654 WP_307892529.1 ABC transporter permease -
  RBH91_RS18890 - 3775390..3776529 (-) 1140 WP_307892530.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10454.26 Da        Isoelectric Point: 6.3254

>NTDB_id=871764 RBH91_RS18855 WP_076760941.1 3771378..3771662(-) (abrB) [Bacillus swezeyi strain EA208]
MKNTGIVRRIDELGRVVLPVELRRVLNINEKDPLEIYSDGENIILTKYASNMACLMTGEITTQNKTYAGGKIVLSPRGAE
MLLEDMMGALAEKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=871764 RBH91_RS18855 WP_076760941.1 3771378..3771662(-) (abrB) [Bacillus swezeyi strain EA208]
ATGAAAAATACGGGAATTGTCCGCAGAATAGATGAACTTGGCAGAGTGGTTCTTCCGGTTGAATTGCGGAGGGTGCTGAA
CATCAATGAAAAAGATCCGCTTGAAATTTACAGTGACGGGGAAAACATCATCTTAACCAAATACGCATCAAACATGGCCT
GCCTGATGACCGGTGAAATCACAACCCAGAACAAAACATATGCAGGCGGCAAAATCGTGCTCAGTCCCCGCGGAGCGGAG
ATGCTTTTGGAAGATATGATGGGGGCTTTGGCAGAAAAGAAATAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-84)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1S0G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.889

95.745

0.564