Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RBH91_RS15710 Genome accession   NZ_CP133085
Coordinates   3164628..3165377 (-) Length   249 a.a.
NCBI ID   WP_307892160.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3159628..3170377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS15685 mreC 3159895..3160806 (-) 912 WP_076763003.1 rod shape-determining protein MreC -
  RBH91_RS15690 - 3160837..3161847 (-) 1011 WP_076763005.1 rod shape-determining protein -
  RBH91_RS15695 radC 3161935..3162609 (-) 675 WP_076763007.1 DNA repair protein RadC -
  RBH91_RS15700 - 3162664..3163236 (-) 573 WP_076763009.1 nucleoside triphosphate pyrophosphatase -
  RBH91_RS15705 - 3163396..3164424 (-) 1029 WP_307892159.1 SPOR domain-containing protein -
  RBH91_RS15710 comC 3164628..3165377 (-) 750 WP_307892160.1 prepilin peptidase Machinery gene
  RBH91_RS15715 - 3165520..3166818 (-) 1299 WP_307892161.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RBH91_RS15720 - 3166897..3169539 (-) 2643 WP_307892162.1 valine--tRNA ligase -
  RBH91_RS15725 - 3169998..3170189 (+) 192 WP_076763020.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26957.79 Da        Isoelectric Point: 9.9453

>NTDB_id=871754 RBH91_RS15710 WP_307892160.1 3164628..3165377(-) (comC) [Bacillus swezeyi strain EA208]
MFLAYLFLAGLVLGSFFNAAGRRIPAKISLITPRSSCPVCRRKLTFLELIPVLSYLFLQGRCRGCKSPVSIVYPAVELSA
AMLFVLAGLRFGCQGELVIALALISLLLIVFVSDVVYMVIPDTILCFFLPFFVIGRVLVPLEPWHSSLTGAIAGFLLPLF
TVVVTRNGIGGGDVKLFAVIGFVLGSRLIFLVFFLSAAAGTVLGIAGILAGKVKRREPMPFAPAILIGTLASCFYGQQLI
DRYIQFMLV

Nucleotide


Download         Length: 750 bp        

>NTDB_id=871754 RBH91_RS15710 WP_307892160.1 3164628..3165377(-) (comC) [Bacillus swezeyi strain EA208]
ATGTTTTTGGCTTATCTTTTTCTAGCAGGCTTAGTGCTCGGCTCTTTTTTTAATGCCGCCGGCCGCCGCATACCTGCAAA
AATATCTCTGATCACCCCCCGCTCCTCATGTCCTGTCTGCCGCCGCAAACTGACCTTTCTTGAGCTTATACCGGTTTTAT
CCTATCTATTTCTGCAAGGAAGATGCAGAGGCTGCAAAAGCCCTGTTTCTATTGTTTACCCTGCTGTTGAACTGTCTGCA
GCCATGCTGTTTGTTTTGGCGGGGCTCCGGTTTGGCTGTCAGGGAGAACTGGTGATTGCACTCGCTCTTATTTCCTTGCT
GCTGATTGTTTTTGTCTCAGATGTCGTGTATATGGTGATTCCGGATACCATCCTTTGTTTTTTTCTGCCTTTTTTCGTCA
TTGGCAGAGTGCTGGTTCCGCTTGAGCCGTGGCATTCCAGTTTGACAGGAGCGATAGCCGGCTTCCTGCTTCCGCTGTTT
ACAGTGGTGGTGACAAGGAATGGAATCGGCGGGGGAGATGTCAAGCTGTTTGCCGTTATTGGTTTTGTCCTCGGCTCCAG
GCTGATATTTCTCGTATTTTTCCTCTCCGCAGCGGCCGGAACCGTGCTGGGTATTGCCGGAATACTGGCAGGAAAGGTTA
AAAGGCGGGAGCCGATGCCTTTTGCACCTGCCATTTTGATCGGAACGCTGGCTTCCTGTTTTTACGGCCAACAATTGATA
GATCGATATATTCAATTTATGCTTGTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(102-205)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50.407

98.795

0.498