Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RBH91_RS14680 Genome accession   NZ_CP133085
Coordinates   2974316..2974951 (-) Length   211 a.a.
NCBI ID   WP_307892037.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2969316..2979951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS14655 rpsT 2969522..2969788 (+) 267 WP_076761927.1 30S ribosomal protein S20 -
  RBH91_RS14660 holA 2969845..2970885 (-) 1041 WP_076761967.1 DNA polymerase III subunit delta -
  RBH91_RS14665 - 2971118..2971249 (+) 132 WP_076761928.1 YqzM family protein -
  RBH91_RS14670 comEC 2971347..2973671 (-) 2325 WP_307892036.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RBH91_RS14675 - 2973678..2974247 (-) 570 WP_076761930.1 ComE operon protein 2 -
  RBH91_RS14680 comEA 2974316..2974951 (-) 636 WP_307892037.1 helix-hairpin-helix domain-containing protein Machinery gene
  RBH91_RS14685 comER 2975034..2975855 (+) 822 WP_307892038.1 late competence protein ComER -
  RBH91_RS14690 - 2975923..2976678 (-) 756 WP_307892039.1 class I SAM-dependent methyltransferase -
  RBH91_RS14695 rsfS 2976678..2977031 (-) 354 WP_307892040.1 ribosome silencing factor -
  RBH91_RS14700 yqeK 2977045..2977608 (-) 564 WP_307892041.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RBH91_RS14705 - 2977598..2978167 (-) 570 WP_307892042.1 nicotinate-nucleotide adenylyltransferase -
  RBH91_RS14710 yhbY 2978188..2978478 (-) 291 WP_307892043.1 ribosome assembly RNA-binding protein YhbY -
  RBH91_RS14715 aroE 2978478..2979308 (-) 831 WP_307892044.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22554.62 Da        Isoelectric Point: 4.9769

>NTDB_id=871750 RBH91_RS14680 WP_307892037.1 2974316..2974951(-) (comEA) [Bacillus swezeyi strain EA208]
MPNWLKQYKWFAAGGFVLVIIISAIIVMQNVKHEPSASPSVPDEAAAHSSDRPQTVKKDEKAKEAEAIVIDLKGAVKQPG
VYEMRAGDRVHHLLKKAGGTVKKAAEEQVNLAAVLQDGMVVYIPYEGEEAAPIPSESVASAADGGAGQMININTASSEEL
QEIPGVGPSKAETIITYREENGPFQTIEDITNVSGIGEKSFEKIKSSISVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=871750 RBH91_RS14680 WP_307892037.1 2974316..2974951(-) (comEA) [Bacillus swezeyi strain EA208]
TTGCCGAATTGGCTTAAGCAATACAAATGGTTTGCAGCAGGGGGATTTGTGCTTGTTATAATCATCAGTGCAATCATCGT
CATGCAAAACGTCAAGCATGAACCCTCCGCAAGCCCGAGTGTGCCTGATGAAGCTGCGGCTCATTCGTCTGACCGGCCGC
AAACTGTAAAAAAGGATGAGAAAGCCAAAGAAGCAGAAGCGATAGTGATAGATCTGAAGGGGGCTGTGAAACAGCCGGGC
GTTTATGAGATGAGGGCCGGCGACCGAGTGCATCATCTACTAAAAAAAGCTGGCGGCACAGTGAAAAAAGCAGCTGAGGA
ACAAGTCAATCTGGCTGCCGTTTTACAGGATGGCATGGTTGTTTATATTCCATATGAAGGAGAAGAAGCCGCTCCCATAC
CTTCTGAATCCGTAGCATCTGCCGCAGATGGCGGAGCGGGTCAGATGATCAATATTAATACAGCTTCCTCTGAAGAGCTT
CAGGAGATTCCGGGTGTCGGGCCTTCAAAGGCGGAAACGATCATCACATACCGGGAGGAAAATGGCCCCTTTCAGACAAT
AGAAGACATTACAAATGTTTCGGGAATTGGAGAAAAGTCATTTGAAAAAATAAAATCCTCAATCTCGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(148-208)

SLBB domain (SLBB)

(70-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

55.66

100

0.559