Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RBH91_RS14510 Genome accession   NZ_CP133085
Coordinates   2941741..2942511 (-) Length   256 a.a.
NCBI ID   WP_076761903.1    Uniprot ID   A0A1R1RUB3
Organism   Bacillus swezeyi strain EA208     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2936741..2947511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS14490 - 2936790..2937602 (-) 813 WP_076761900.1 pyruvate, water dikinase regulatory protein -
  RBH91_RS14495 - 2937628..2938266 (-) 639 WP_307892019.1 helix-turn-helix transcriptional regulator -
  RBH91_RS14500 glyS 2938466..2940505 (-) 2040 WP_307892020.1 glycine--tRNA ligase subunit beta -
  RBH91_RS14505 glyQ 2940498..2941385 (-) 888 WP_307892021.1 glycine--tRNA ligase subunit alpha -
  RBH91_RS14510 recO 2941741..2942511 (-) 771 WP_076761903.1 DNA repair protein RecO Machinery gene
  RBH91_RS14515 - 2942548..2942691 (-) 144 WP_148957280.1 YqzL family protein -
  RBH91_RS14520 era 2942853..2943758 (-) 906 WP_307892022.1 GTPase Era -
  RBH91_RS14525 - 2943739..2944149 (-) 411 WP_307892023.1 cytidine deaminase -
  RBH91_RS14530 - 2944285..2944665 (-) 381 WP_076761906.1 diacylglycerol kinase family protein -
  RBH91_RS14535 ybeY 2944643..2945119 (-) 477 WP_307892024.1 rRNA maturation RNase YbeY -
  RBH91_RS14540 - 2945116..2947200 (-) 2085 WP_307894758.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29384.14 Da        Isoelectric Point: 9.2606

>NTDB_id=871747 RBH91_RS14510 WP_076761903.1 2941741..2942511(-) (recO) [Bacillus swezeyi strain EA208]
MLTKCEGIVLRTNDYGESNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYGSFLFRKSSGLGTLEQGEMIDSMRT
IREDLFLTAHAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIITNLIEVKMLSVIGLYPELNECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRVPMSPASARLLRLFFYFDLSRLGNVSVKQETKEELKKVIQLYYDEYSGIFLKSRRFI
EQMDNMKKMLGKENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=871747 RBH91_RS14510 WP_076761903.1 2941741..2942511(-) (recO) [Bacillus swezeyi strain EA208]
ATGCTAACGAAATGTGAAGGTATCGTCCTTCGTACAAATGACTACGGTGAATCAAATAAAATCATCACATTATTGACCAG
GGAACATGGAAAAATCGGCGTGCTGGCAAGGGGCGCAAAAAAACCGAACAGCCGCTTGTCGGCCATTTCCCAGCCGTTTC
TCTACGGTTCGTTTTTATTCCGGAAATCATCAGGCCTTGGAACTTTGGAGCAGGGAGAGATGATCGATAGCATGCGGACG
ATCCGGGAAGATCTGTTTTTAACAGCGCACGCGGCATATATCGCAGAATTAATCGATAAAGGAACTGAGGAAAAGAAACC
GAATCCGTTTTTATTCGAACTGCTTCTTCAGTCGATGAGGAGGCTGAACGACGGTACAGATCCCGACATCATCACCAATC
TCATCGAAGTCAAAATGCTCAGCGTCATCGGCCTGTACCCGGAATTGAACGAATGTGTACACTGCAAAAGCAAAGATGGC
ACATTTCATTTTTCAATCAGGGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCGTACAGAGTACCAATGTC
TCCTGCTTCCGCAAGGCTCTTGAGGCTGTTTTTTTATTTTGATCTGTCAAGGCTTGGGAATGTATCGGTCAAACAGGAGA
CAAAGGAAGAGCTGAAAAAGGTCATCCAGCTTTATTATGATGAGTACTCCGGGATTTTTCTAAAGTCGCGGCGCTTCATC
GAGCAAATGGACAATATGAAAAAAATGCTCGGTAAAGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1RUB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.734

100

0.777