Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RBH91_RS12710 Genome accession   NZ_CP133085
Coordinates   2578057..2578656 (+) Length   199 a.a.
NCBI ID   WP_076758965.1    Uniprot ID   A0A1R1S2P0
Organism   Bacillus swezeyi strain EA208     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2573057..2583656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS12670 - 2574086..2574592 (-) 507 WP_076763986.1 PTS glucose transporter subunit IIA -
  RBH91_RS12675 - 2574769..2575185 (+) 417 WP_307891826.1 Hsp20/alpha crystallin family protein -
  RBH91_RS12680 - 2575209..2575640 (-) 432 WP_307891827.1 YppG family protein -
  RBH91_RS12685 - 2575822..2576022 (+) 201 WP_076758974.1 YppF family protein -
  RBH91_RS12690 - 2576051..2576425 (-) 375 WP_076758972.1 YppE family protein -
  RBH91_RS12695 - 2576480..2576707 (-) 228 WP_307891828.1 DUF5446 family protein -
  RBH91_RS12700 sspM 2576909..2577013 (+) 105 WP_076758967.1 acid-soluble spore protein SspM -
  RBH91_RS12705 - 2577046..2578005 (-) 960 WP_404802442.1 DUF2515 domain-containing protein -
  RBH91_RS12710 recU 2578057..2578656 (+) 600 WP_076758965.1 Holliday junction resolvase RecU Machinery gene
  RBH91_RS12715 - 2578715..2581369 (+) 2655 WP_307891829.1 PBP1A family penicillin-binding protein -
  RBH91_RS12720 - 2581390..2581893 (-) 504 WP_307891830.1 YpoC family protein -
  RBH91_RS12725 nth 2581890..2582552 (-) 663 WP_307891831.1 endonuclease III -
  RBH91_RS12730 - 2582570..2583265 (-) 696 WP_307891832.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23221.37 Da        Isoelectric Point: 9.3852

>NTDB_id=871739 RBH91_RS12710 WP_076758965.1 2578057..2578656(+) (recU) [Bacillus swezeyi strain EA208]
MIRYPNGKTYQPKQAASSLNKKPSSYSNRGMTLEDDLNETNMYYLSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFK
QSSTTDYNGIYKGRYIDFEAKETKNRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFDEIYILEAEKLFYFWERKQKN
GRKSIRKDELQEAAHPISLGYSPRIDYIKVIDQLYFSPS

Nucleotide


Download         Length: 600 bp        

>NTDB_id=871739 RBH91_RS12710 WP_076758965.1 2578057..2578656(+) (recU) [Bacillus swezeyi strain EA208]
GTGATTCGATATCCGAACGGCAAAACCTATCAGCCGAAACAAGCTGCCTCATCCTTAAATAAGAAGCCGTCGTCATATAG
CAATCGCGGGATGACCCTCGAAGACGATCTAAATGAAACGAATATGTATTATCTGTCTCATTCGATTGCGGTGATTCATA
AAAAACCGACACCTGTTCAGATTGTACAGGTCGATTACCCGAAACGAAGCGCCGCGGTCATAAAAGAAGCATATTTCAAG
CAGTCGTCAACTACTGATTATAATGGGATTTATAAAGGGCGCTACATCGATTTTGAAGCAAAAGAAACGAAGAACCGAAC
ATCTTTCCCCCTGCAGAATTTTCACGATCACCAGATCGAACACATGAAGCAGGTCGTAGCTCAAGACGGTATTTGTTTTG
TTATTATATCCGCATTTGACGAAATTTATATTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGCAAGCAGAAAAAC
GGCAGAAAATCGATTCGAAAAGATGAACTGCAGGAAGCCGCTCACCCCATTTCGCTTGGATACTCGCCAAGAATTGATTA
TATTAAAGTTATTGACCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(29-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1S2P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

84.577

100

0.854