Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RBH91_RS10780 Genome accession   NZ_CP133085
Coordinates   2145068..2145496 (+) Length   142 a.a.
NCBI ID   WP_307894537.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2145753..2146510 2145068..2145496 flank 257


Gene organization within MGE regions


Location: 2145068..2146510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS10780 nucA/comI 2145068..2145496 (+) 429 WP_307894537.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15343.40 Da        Isoelectric Point: 9.6404

>NTDB_id=871738 RBH91_RS10780 WP_307894537.1 2145068..2145496(+) (nucA/comI) [Bacillus swezeyi strain EA208]
MLKRWTIRLLLIAAVLPGLSGGAASSTQHAKGAARYDDVLYFPKSRYPQTGAHISDAIKAGHSDVCTIEREGADKRRQES
LKGIPTKPGYDRDEWPMAMCEEGGKGASVRYVASTDNRGAGSWVGSRLSGYADGTKILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=871738 RBH91_RS10780 WP_307894537.1 2145068..2145496(+) (nucA/comI) [Bacillus swezeyi strain EA208]
ATGTTGAAGAGATGGACGATTCGATTACTGCTTATTGCGGCTGTGCTGCCAGGGCTTTCTGGAGGTGCTGCATCGTCAAC
GCAGCATGCAAAAGGAGCTGCAAGATATGATGATGTTTTGTATTTCCCGAAATCACGCTATCCTCAAACAGGGGCGCATA
TCAGCGATGCCATTAAAGCCGGTCATTCCGATGTCTGTACAATCGAAAGAGAAGGAGCGGATAAGCGGCGCCAGGAGTCT
TTAAAAGGGATTCCGACGAAACCGGGATATGATCGTGATGAATGGCCGATGGCGATGTGTGAGGAAGGAGGAAAGGGGGC
ATCAGTGAGATATGTCGCTTCAACAGATAACCGGGGGGCAGGCTCCTGGGTCGGCAGCAGGCTGAGCGGATATGCCGATG
GAACAAAAATTTTGTTTATTGTTCAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.871

87.324

0.514