Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RBH91_RS08725 Genome accession   NZ_CP133085
Coordinates   1754147..1754434 (+) Length   95 a.a.
NCBI ID   WP_307894225.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749147..1759434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS08705 - 1750744..1751118 (+) 375 WP_307894220.1 nuclear transport factor 2 family protein -
  RBH91_RS08710 - 1751300..1752532 (-) 1233 WP_307894222.1 aminopeptidase -
  RBH91_RS08715 - 1752620..1752751 (-) 132 WP_307894223.1 protein YkpC -
  RBH91_RS08720 mreBH 1752825..1753832 (-) 1008 WP_076764179.1 rod-share determining protein MreBH -
  RBH91_RS08725 abrB 1754147..1754434 (+) 288 WP_307894225.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RBH91_RS08730 - 1754625..1755956 (+) 1332 WP_307894226.1 ATP-binding protein -
  RBH91_RS08735 - 1756026..1756691 (+) 666 WP_076764187.1 TrkA family potassium uptake protein -
  RBH91_RS08740 ade 1756815..1758536 (+) 1722 WP_307894228.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10727.51 Da        Isoelectric Point: 5.8808

>NTDB_id=871733 RBH91_RS08725 WP_307894225.1 1754147..1754434(+) (abrB) [Bacillus swezeyi strain EA208]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCFMTGEITSENREYGNGNITLSPEGAE
MLLEEIKNALYQAKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=871733 RBH91_RS08725 WP_307894225.1 1754147..1754434(+) (abrB) [Bacillus swezeyi strain EA208]
TTGAAAGCAATAGGAGTAGTAAGAAAAGTGGACGAACTCGGACGCATCGTGATGCCGATTGAATTAAGAAGGGCATTGGA
TATATCGATCAAGGACAGTATTGAATTTTTTGTCGACCAGGATAAAATTGTTCTGAAAAAATATAAACCGCACGGTGTCT
GTTTTATGACAGGCGAGATCACGTCTGAAAACCGTGAATACGGAAACGGAAATATTACGCTGAGTCCTGAGGGAGCAGAA
ATGCTTTTAGAGGAAATTAAAAACGCGCTGTATCAGGCGAAAGCATAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537