Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RBH91_RS08490 Genome accession   NZ_CP133085
Coordinates   1712719..1713180 (-) Length   153 a.a.
NCBI ID   WP_076762194.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1707719..1718180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS08465 - 1708047..1709227 (-) 1181 Protein_1629 aminotransferase A -
  RBH91_RS08470 - 1709424..1709579 (-) 156 WP_162274724.1 hypothetical protein -
  RBH91_RS08475 - 1709753..1710274 (+) 522 WP_307894176.1 RDD family protein -
  RBH91_RS08480 - 1710377..1711696 (+) 1320 WP_307894177.1 MFS transporter -
  RBH91_RS08485 - 1711770..1712687 (+) 918 WP_307894178.1 chemotaxis protein -
  RBH91_RS08490 kre 1712719..1713180 (-) 462 WP_076762194.1 YkyB family protein Regulator
  RBH91_RS08495 - 1713320..1714621 (-) 1302 WP_307894180.1 MFS transporter -
  RBH91_RS08500 - 1714709..1715206 (-) 498 WP_083696907.1 L,D-transpeptidase family protein -
  RBH91_RS08505 - 1715397..1716254 (-) 858 WP_076762197.1 metallophosphoesterase -
  RBH91_RS08510 fadH 1716399..1717163 (+) 765 WP_076762198.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17648.46 Da        Isoelectric Point: 10.6730

>NTDB_id=871731 RBH91_RS08490 WP_076762194.1 1712719..1713180(-) (kre) [Bacillus swezeyi strain EA208]
MDDHNHTKELKPTIENLSKAIYTVNRHAKTATNPKYLYVLKKKALQKLVNEGKGKKVGLHFSKNPRFSQQQSDVLISLGD
YFFHMPPTKEDFVNLPHLGTLNHSYRNPKAHMSLNVAKQLLQNYTGMKEKPLVTNRKRPSTKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=871731 RBH91_RS08490 WP_076762194.1 1712719..1713180(-) (kre) [Bacillus swezeyi strain EA208]
ATGGACGACCATAATCATACTAAAGAATTAAAGCCAACGATTGAGAACCTTTCAAAAGCGATTTACACAGTCAATCGCCA
TGCCAAAACCGCAACTAATCCCAAATACCTGTATGTCCTGAAAAAGAAAGCTTTACAAAAGCTGGTCAACGAAGGAAAAG
GTAAAAAGGTAGGACTTCACTTTTCAAAAAACCCAAGATTCAGCCAGCAGCAGTCAGATGTGCTGATTTCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACTAAAGAAGACTTCGTAAATCTTCCGCACTTAGGTACACTAAATCATTCGTATCGGAA
CCCTAAAGCTCATATGTCTTTGAACGTAGCCAAACAGCTTCTTCAAAACTACACGGGAATGAAAGAAAAACCGCTCGTCA
CCAACAGAAAGCGGCCTTCGACAAAACCCGTATTCAAGAAGCTCGGTGAAAGCTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

81.818

100

0.824