Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RBH91_RS06095 Genome accession   NZ_CP133085
Coordinates   1272992..1273570 (+) Length   192 a.a.
NCBI ID   WP_307893821.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267992..1278570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS22630 - 1268497..1269003 (-) 507 WP_404802495.1 methyl-accepting chemotaxis protein -
  RBH91_RS22635 - 1269256..1269789 (-) 534 Protein_1148 protoglobin family protein -
  RBH91_RS06080 - 1269893..1271422 (-) 1530 WP_307893820.1 FAD-dependent oxidoreductase -
  RBH91_RS06085 - 1271555..1272412 (+) 858 WP_076761722.1 SDR family oxidoreductase -
  RBH91_RS06090 - 1272482..1272715 (-) 234 WP_076761723.1 IDEAL domain-containing protein -
  RBH91_RS06095 comK 1272992..1273570 (+) 579 WP_307893821.1 competence protein ComK Regulator
  RBH91_RS06100 - 1273571..1273930 (-) 360 WP_307893822.1 hypothetical protein -
  RBH91_RS06105 - 1274140..1274751 (+) 612 WP_307893823.1 TVP38/TMEM64 family protein -
  RBH91_RS06110 lepB 1274764..1275279 (+) 516 WP_076761727.1 signal peptidase I -
  RBH91_RS06115 - 1275741..1277519 (-) 1779 WP_404802479.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22408.63 Da        Isoelectric Point: 8.6298

>NTDB_id=871720 RBH91_RS06095 WP_307893821.1 1272992..1273570(+) (comK) [Bacillus swezeyi strain EA208]
MSTEDMTKDSYEVNSSTMAVLPLGEGEKPASKILETERTFRVNMRPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSTNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFLDRIEGS
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=871720 RBH91_RS06095 WP_307893821.1 1272992..1273570(+) (comK) [Bacillus swezeyi strain EA208]
ATGAGTACAGAGGATATGACAAAGGATTCTTATGAAGTAAACAGTTCGACAATGGCCGTTCTGCCTCTGGGAGAGGGTGA
AAAGCCCGCTTCAAAAATTCTTGAAACCGAAAGGACATTCCGGGTCAATATGAGGCCTTTTCAAATCATAGAAAGAAGCT
GCCGCTATTTCGGTTCAAGCTATGCCGGAAGAAAAGCGGGCACATATGAAGTGATTAAAGTTTCCCATAAACCGCCGATT
ATGGTCGATCATTCAACCAATATTTTTCTTTTTCCCACATTCTCCTCAACGAGGCCTCAGTGCGGGTGGCTTTCCCATGC
ACATGTTCACGAATTTTGCGCGGCAAAATATGACAATACATTCGTCACTTTTGTAAATGGGGAAACATTAGAGCTGCCTG
TATCCATCACATCTTTCGAAAATCAGGTTTACCGCACGGCGTGGCTGAGAACCAAATTTCTTGATCGGATCGAAGGCAGC
GCCATGCAAAAGAAACAGGAATTTATGCTGTATCCGAAAGAAGACCGGAACCAGCTGATATATGAATTCATCCTCAGAGA
GCTGAAAAAACGCTACTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

67.553

97.917

0.661