Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ95_RS05190 Genome accession   NZ_AP027543
Coordinates   1066971..1067486 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-48     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061971..1072486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ95_RS05145 (VEE34_09920) csrA 1062558..1062743 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABJ95_RS05175 (VEE34_09930) yqaB 1064201..1064767 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ95_RS05180 (VEE34_09940) yqaA 1064764..1065192 (+) 429 WP_001287454.1 YqaA family protein -
  AABJ95_RS05185 (VEE34_09950) gshA 1065265..1066821 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABJ95_RS05190 (VEE34_09960) luxS 1066971..1067486 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ95_RS05195 (VEE34_09970) emrB 1067550..1069088 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ95_RS05200 (VEE34_09980) emrA 1069105..1070277 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ95_RS05205 (VEE34_09990) emrR 1070404..1070934 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ95_RS05210 (VEE34_10000) ygaH 1071025..1071360 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  AABJ95_RS05215 (VEE34_10010) ygaZ 1071350..1072087 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=87172 AABJ95_RS05190 WP_001130211.1 1066971..1067486(+) (luxS) [Escherichia coli strain LR-48]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=87172 AABJ95_RS05190 WP_001130211.1 1066971..1067486(+) (luxS) [Escherichia coli strain LR-48]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment