Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RBH91_RS02565 Genome accession   NZ_CP133085
Coordinates   572946..573899 (+) Length   317 a.a.
NCBI ID   WP_307893373.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 567946..578899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS02550 - 568314..569003 (+) 690 WP_307893370.1 hypothetical protein -
  RBH91_RS02555 - 569443..571161 (-) 1719 WP_307893371.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  RBH91_RS02560 - 571303..572664 (-) 1362 WP_307893372.1 aspartate kinase -
  RBH91_RS02565 ceuB 572946..573899 (+) 954 WP_307893373.1 ABC transporter permease Machinery gene
  RBH91_RS02570 - 573889..574833 (+) 945 WP_307893375.1 iron chelate uptake ABC transporter family permease subunit -
  RBH91_RS02575 - 574833..575594 (+) 762 WP_307893376.1 ABC transporter ATP-binding protein -
  RBH91_RS02580 - 575605..576555 (+) 951 WP_307893377.1 siderophore ABC transporter substrate-binding protein -
  RBH91_RS02585 hxlB 576825..577382 (-) 558 WP_307893379.1 6-phospho-3-hexuloisomerase -
  RBH91_RS02590 hxlA 577387..578019 (-) 633 WP_076761185.1 3-hexulose-6-phosphate synthase -
  RBH91_RS02595 - 578191..578532 (+) 342 Protein_478 winged helix-turn-helix transcriptional regulator -
  RBH91_RS02600 - 578515..578853 (+) 339 WP_223831685.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35165.69 Da        Isoelectric Point: 9.8719

>NTDB_id=871713 RBH91_RS02565 WP_307893373.1 572946..573899(+) (ceuB) [Bacillus swezeyi strain EA208]
MKLRYLLLLLIILSFCSIFIGVKELSPLDLFQLNEDEIQTLYISRIPRMISIVLAGMSLSICGLMMQQLTRNKFVSPTTA
GTMDWARLGVIIAILLFSSAGIFVKMLFAFVFALIGSFLFVKILDRIKFKDAVFIPLVGLMLGSVVSAISIFMAYQYNLI
QNVNAWFEGNFSLIMKGRYELLYLSIPLVIIAYLFANKFTVAGMGESFAVNLGLNYKRVINIGLIIVSVISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAMLGAVFVLICDILGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=871713 RBH91_RS02565 WP_307893373.1 572946..573899(+) (ceuB) [Bacillus swezeyi strain EA208]
ATGAAATTACGGTATTTATTGCTACTGCTCATCATTCTTTCTTTCTGTTCTATTTTCATCGGCGTTAAGGAATTGTCGCC
TCTCGATCTTTTTCAATTGAATGAGGATGAAATCCAAACGCTTTACATAAGCCGGATTCCGCGTATGATCAGCATTGTGC
TCGCGGGAATGAGCCTCAGCATCTGCGGATTGATGATGCAGCAGCTGACGCGCAATAAATTTGTCTCACCGACTACAGCC
GGAACAATGGATTGGGCGAGACTCGGCGTCATCATAGCCATCTTGCTTTTTTCTTCCGCCGGCATTTTTGTAAAAATGCT
GTTTGCCTTTGTTTTTGCACTGATTGGCAGTTTTCTGTTTGTTAAAATTTTGGACAGAATCAAGTTTAAAGATGCCGTAT
TTATCCCTCTTGTCGGCTTAATGCTAGGAAGCGTTGTCAGCGCCATCTCCATTTTCATGGCTTATCAGTATAATCTCATT
CAAAACGTCAATGCATGGTTTGAGGGGAATTTCTCGCTGATCATGAAGGGGAGGTACGAGCTTTTATACCTGAGTATCCC
GCTCGTTATCATTGCCTATCTTTTCGCCAACAAATTTACCGTGGCCGGGATGGGGGAAAGCTTTGCCGTCAATCTGGGAC
TGAATTATAAGCGGGTCATCAATATCGGGCTGATCATTGTATCTGTTATCTCATCCGTCGTCATTCTGACGGTCGGCACG
CTTCCATTTCTGGGTCTGATCATTCCAAACATTGTCTCGATCTACCGCGGGGACCATTTGAAAAACAGTCTGCCTCATAC
GGCAATGCTCGGCGCCGTTTTTGTCCTGATATGTGATATTTTGGGCCGGCTCGTCATCTATCCGTATGAAATTTCTGTCG
GCTTGATGGTCGGCATCATTGGAAGCGGCGTTTTTCTTTATTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514