Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RBH91_RS00265 Genome accession   NZ_CP133085
Coordinates   48858..49148 (-) Length   96 a.a.
NCBI ID   WP_094777310.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43858..54148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS00225 - 43875..44204 (+) 330 WP_076761035.1 cyclic-di-AMP receptor -
  RBH91_RS00230 - 44216..44656 (+) 441 WP_148959290.1 YaaR family protein -
  RBH91_RS00235 holB 44668..45657 (+) 990 WP_307893060.1 DNA polymerase III subunit delta' -
  RBH91_RS00240 - 45660..46487 (+) 828 WP_307893061.1 stage 0 sporulation family protein -
  RBH91_RS00245 yabA 46502..46864 (+) 363 WP_076761031.1 DNA replication initiation control protein YabA -
  RBH91_RS00250 - 46930..47673 (+) 744 WP_307893062.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RBH91_RS00255 - 47660..47959 (+) 300 WP_307893063.1 GIY-YIG nuclease family protein -
  RBH91_RS00260 rsmI 47934..48809 (+) 876 WP_307894604.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RBH91_RS00265 abrB 48858..49148 (-) 291 WP_094777310.1 transition state genes transcriptional regulator AbrB Regulator
  RBH91_RS00270 metG 49655..51643 (+) 1989 WP_307893064.1 methionine--tRNA ligase -
  RBH91_RS00275 - 51736..52503 (+) 768 WP_307893065.1 TatD family hydrolase -
  RBH91_RS00280 - 52749..53948 (+) 1200 WP_239693595.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10669.41 Da        Isoelectric Point: 5.1848

>NTDB_id=871707 RBH91_RS00265 WP_094777310.1 48858..49148(-) (abrB) [Bacillus swezeyi strain EA208]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIISEIQSQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=871707 RBH91_RS00265 WP_094777310.1 48858..49148(-) (abrB) [Bacillus swezeyi strain EA208]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
ACTTGGAATTGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATACAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCAGAAGGC
GCTGAGCAAATCATTAGCGAAATTCAATCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

100

0.948