Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RBH91_RS00020 Genome accession   NZ_CP133085
Coordinates   3069..4181 (+) Length   370 a.a.
NCBI ID   WP_076760221.1    Uniprot ID   A0A1R1S230
Organism   Bacillus swezeyi strain EA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS00005 dnaA 1..1341 (+) 1341 WP_307893035.1 chromosomal replication initiator protein DnaA -
  RBH91_RS00010 dnaN 1530..2666 (+) 1137 WP_307893037.1 DNA polymerase III subunit beta -
  RBH91_RS00015 yaaA 2836..3051 (+) 216 WP_076760219.1 S4 domain-containing protein YaaA -
  RBH91_RS00020 recF 3069..4181 (+) 1113 WP_076760221.1 DNA replication/repair protein RecF Machinery gene
  RBH91_RS00025 remB 4200..4442 (+) 243 WP_076760223.1 extracellular matrix regulator RemB -
  RBH91_RS00030 gyrB 4502..6415 (+) 1914 WP_307893039.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RBH91_RS00035 gyrA 6617..9094 (+) 2478 WP_307893040.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42479.37 Da        Isoelectric Point: 6.7332

>NTDB_id=871705 RBH91_RS00020 WP_076760221.1 3069..4181(+) (recF) [Bacillus swezeyi strain EA208]
MYIQNLTLSSYRNYERLELQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSRYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLNEAGIFRVENGTLLD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=871705 RBH91_RS00020 WP_076760221.1 3069..4181(+) (recF) [Bacillus swezeyi strain EA208]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAACTATGAGCGCCTTGAGCTCCAATTTGAGAACAAAGTAAACGT
GATCATTGGAGAGAACGCCCAAGGCAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCAATGGCAAAATCTCATCGAA
CCTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAGCAGCAGAAGCTCAGCCGGTA
TGTCGGGGCCGTTAACACGATTATGTTTGCGCCGGAGGATTTGAATCTTGTAAAAGGCAGCCCCCAGGTCAGAAGAAGAT
TTCTCGATATGGAAATCGGCCAAGTATCACCAGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAGCGA
AATCACTTCTTGAAGCAGCTCCAAACGAGAAAACAGACTGATCAAACAATGCTTGATGTGCTGACGGAACAGCTCACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGCCTTCAGTTTGTCGATCAGCTCGAAAAATGGGCTCAGCCCATCCATTCAGGAA
TTTCAAGAGGGCTGGAGGAACTGACCTTGAAGTATCATACATCTCTTCACGTATCAGATTCGCCTGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTACGAGATAAAGAAATTGAACGGGGTGTATCCCTTTCAGGTCCTCACAG
AGATGATGTTCTTTTTTATGTCAATGGGCGGGATGTACAGACTTACGGATCGCAAGGCCAGCAGCGGACGACAGCACTGT
CCCTGAAATTGGCGGAAATTGATTTGATTCAGGAGGAAATTGGGGAATATCCGATTCTGCTTTTGGATGATGTATTATCA
GAGCTGGATGACTATCGGCAGTCTCACTTGCTCCACACTATCCAAGGCCGTGTTCAAACATTCGTTACTACGACAAGCGT
TGATGGAATTGATCATGAAACCTTAAATGAAGCAGGTATCTTTCGTGTTGAAAATGGCACGCTATTGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1S230

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.431

99.73

0.892