Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RBH92_RS08135 Genome accession   NZ_CP133083
Coordinates   1736396..1737844 (-) Length   482 a.a.
NCBI ID   WP_307931610.1    Uniprot ID   -
Organism   Nitrosomonas sp. sh817     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731396..1742844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH92_RS08100 (RBH92_08095) - 1731561..1731815 (+) 255 WP_292923851.1 Rho-binding antiterminator -
  RBH92_RS08105 (RBH92_08100) mutY 1731834..1732907 (+) 1074 WP_307931605.1 A/G-specific adenine glycosylase -
  RBH92_RS08110 (RBH92_08105) - 1733209..1733838 (+) 630 WP_307931606.1 5-formyltetrahydrofolate cyclo-ligase -
  RBH92_RS08115 (RBH92_08110) - 1733841..1734467 (-) 627 WP_307931607.1 flavin prenyltransferase UbiX -
  RBH92_RS08120 (RBH92_08115) hprK 1734518..1735477 (-) 960 WP_307931608.1 HPr(Ser) kinase/phosphatase -
  RBH92_RS08125 (RBH92_08120) - 1735464..1735934 (-) 471 WP_307931609.1 PTS sugar transporter subunit IIA -
  RBH92_RS08130 (RBH92_08125) hpf 1736054..1736377 (-) 324 WP_292923844.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RBH92_RS08135 (RBH92_08130) rpoN/rpoN1 1736396..1737844 (-) 1449 WP_307931610.1 RNA polymerase factor sigma-54 Machinery gene
  RBH92_RS08140 (RBH92_08135) lptB 1737899..1738621 (-) 723 WP_292923841.1 LPS export ABC transporter ATP-binding protein -
  RBH92_RS08145 (RBH92_08140) lptA 1738663..1739196 (-) 534 WP_307931611.1 lipopolysaccharide transport periplasmic protein LptA -
  RBH92_RS08150 (RBH92_08145) lptC 1739206..1739724 (-) 519 WP_307931612.1 LPS export ABC transporter periplasmic protein LptC -
  RBH92_RS08155 (RBH92_08150) nadA 1739996..1741093 (+) 1098 WP_307931613.1 quinolinate synthase NadA -
  RBH92_RS08160 (RBH92_08155) clsB 1741158..1742330 (+) 1173 WP_307931614.1 cardiolipin synthase ClsB -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 54530.65 Da        Isoelectric Point: 4.8580

>NTDB_id=871701 RBH92_RS08135 WP_307931610.1 1736396..1737844(-) (rpoN/rpoN1) [Nitrosomonas sp. sh817]
MKPALQLKLSQQLRLTPQLQQSIRLLQLSTLELNQEIERIVQENPLLEVYEEWDVSTAENAIESTEASNAEDFNQVSAED
TVSLNDDAAEDNFDSNPEWPQENASASSGFEDGDRDSSQLLAEPSSLREHLYFQTALSHISESRKNLVRLLIDSLDEDGY
LLQDLSELQEMLPEELGIAQNDLEEALDCLQHFDPAGVGARNLKECLVLQLKALPGEVCYREQAIRVVREYLEILASHDF
MQIKKLLGCEDQSLRAIQKLITNLNPKPGAQFNLHSERYIVPDITVAKKDGTWVASLNQAAIPRLNINHLYANILKQEHH
SERGLINQLNEAKWLIKNIQQRSSTIHKVASVIVERQQQFFEHGDVAMRPLVLREIAEVLNLHESTVSRVTTQKFMYTPR
GIFELKYFFGSHVATDSGGACSATAIRALIKQLVQEENPRKPLSDNKISNILEQQGIVVARRTIAKYRESLQIPAANLRK
SI

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=871701 RBH92_RS08135 WP_307931610.1 1736396..1737844(-) (rpoN/rpoN1) [Nitrosomonas sp. sh817]
ATGAAGCCAGCACTCCAACTTAAATTATCGCAACAATTGAGGTTGACGCCTCAGTTGCAACAATCTATCCGGTTGCTTCA
ATTATCGACGCTCGAGCTTAATCAGGAGATCGAGCGGATTGTGCAGGAAAATCCATTACTGGAAGTGTATGAAGAGTGGG
ATGTATCGACGGCTGAGAACGCCATCGAATCCACCGAAGCTTCCAATGCTGAAGACTTTAATCAGGTCTCCGCGGAAGAT
ACTGTGTCTTTAAACGATGATGCTGCGGAAGATAATTTTGATTCCAATCCGGAATGGCCGCAAGAGAATGCTTCAGCTTC
GAGTGGTTTCGAGGATGGTGATCGTGATTCATCACAGTTACTGGCGGAACCATCAAGTTTGCGGGAACATTTATATTTTC
AAACCGCTTTAAGTCATATTTCAGAATCCCGGAAAAATCTAGTACGCTTGTTAATCGATAGCCTGGATGAAGATGGTTAT
CTGTTGCAGGATCTAAGCGAATTGCAGGAAATGCTGCCCGAAGAATTGGGGATTGCGCAAAATGACTTGGAAGAGGCGCT
CGACTGCTTGCAACATTTTGATCCGGCCGGCGTAGGCGCGAGGAATTTGAAAGAGTGTCTGGTATTGCAGTTAAAAGCGC
TGCCCGGCGAAGTCTGTTACCGGGAACAAGCCATTCGAGTTGTGCGGGAATATCTGGAAATTCTGGCATCCCATGATTTC
ATGCAAATCAAGAAATTATTGGGGTGTGAAGATCAAAGCTTGCGTGCCATTCAGAAGCTGATCACGAACTTGAATCCAAA
ACCGGGTGCGCAGTTTAATTTACATAGTGAACGCTATATCGTTCCGGATATCACGGTTGCCAAGAAAGACGGAACCTGGG
TGGCGAGCCTGAATCAGGCTGCAATTCCGCGTCTCAATATCAATCATCTCTATGCTAATATATTAAAGCAGGAGCATCAT
TCCGAACGTGGTTTGATAAACCAATTGAATGAAGCTAAGTGGTTGATTAAGAACATTCAGCAACGCTCAAGTACCATTCA
CAAAGTAGCCAGTGTCATTGTGGAGCGTCAACAGCAATTTTTTGAGCATGGAGATGTTGCCATGCGGCCGCTGGTGTTAC
GGGAAATCGCGGAGGTGTTGAATCTTCACGAATCGACGGTATCCCGGGTCACCACGCAAAAATTTATGTATACTCCGCGT
GGCATTTTTGAACTGAAATATTTTTTTGGTAGTCATGTTGCCACCGATTCCGGCGGCGCTTGTTCTGCGACGGCTATCCG
TGCATTAATCAAGCAGCTGGTACAGGAAGAAAATCCAAGGAAACCGCTCAGCGATAATAAAATCTCAAACATACTGGAAC
AACAAGGAATCGTTGTCGCCCGTCGCACTATTGCAAAATACCGGGAATCGTTACAGATTCCTGCAGCCAATCTTCGTAAA
TCCATTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(327-480)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(119-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.901

100

0.521