Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU31_RS12630 Genome accession   NZ_CP148423
Coordinates   2537462..2538091 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323CEC0015     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2532462..2543091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU31_RS12615 (WHU31_12615) helD 2532704..2534758 (-) 2055 WP_000420533.1 DNA helicase IV -
  WHU31_RS12620 (WHU31_12620) yccF 2534881..2535327 (+) 447 WP_001261231.1 YccF domain-containing protein -
  WHU31_RS12625 (WHU31_12625) yccS 2535337..2537499 (+) 2163 WP_000875044.1 YccS family putative transporter -
  WHU31_RS12630 (WHU31_12630) sxy/tfoX 2537462..2538091 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU31_RS12635 (WHU31_12635) sulA 2538310..2538819 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU31_RS12640 (WHU31_12640) ompA 2539176..2540216 (+) 1041 WP_000750416.1 porin OmpA -
  WHU31_RS12645 (WHU31_12645) matP 2540292..2540744 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU31_RS12650 (WHU31_12650) ycbZ 2540930..2542690 (+) 1761 WP_001504145.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=871695 WHU31_RS12630 WP_000839153.1 2537462..2538091(-) (sxy/tfoX) [Escherichia coli strain Z1323CEC0015]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=871695 WHU31_RS12630 WP_000839153.1 2537462..2538091(-) (sxy/tfoX) [Escherichia coli strain Z1323CEC0015]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1