Detailed information NTG0087169

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AABJ95_RS04915
• Genome accession: NZ_AP027543
• Coordinates: 1014152..1015144 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LR-48
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1009152..1020144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ95_RS04885 (VEE34_09400)	ispD	1009213..1009923 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AABJ95_RS04890 (VEE34_09410)	ispF	1009923..1010402 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AABJ95_RS04895 (VEE34_09420)	truD	1010399..1011448 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AABJ95_RS04900 (VEE34_09430)	surE	1011429..1012190 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AABJ95_RS04905 (VEE34_09440)	pcm	1012184..1012810 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AABJ95_RS04910 (VEE34_09450)	nlpD	1012995..1014089 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AABJ95_RS04915 (VEE34_09460)	rpoS	1014152..1015144 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AABJ95_RS04920 (VEE34_09470)	ygbN	1015238..1016602 (-)	1365	WP_000104441.1	GntP family transporter	-
AABJ95_RS04925 (VEE34_09480)	ygbM	1016691..1017467 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AABJ95_RS04930 (VEE34_09490)	ygbL	1017472..1018110 (-)	639	WP_001278994.1	aldolase	-
AABJ95_RS04935 (VEE34_09500)	otnK	1018107..1019369 (-)	1263	Protein_966	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=87169 AABJ95_RS04915 WP_000081550.1 1014152..1015144(+) (rpoS) [Escherichia coli strain LR-48]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=87169 AABJ95_RS04915 WP_000081550.1 1014152..1015144(+) (rpoS) [Escherichia coli strain LR-48]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715