Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RBH93_RS01720 Genome accession   NZ_CP133079
Coordinates   355099..356538 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain HS1906     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350099..361538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH93_RS01690 (RBH93_01690) mlaF 350676..351476 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  RBH93_RS01695 (RBH93_01695) - 351684..352679 (+) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  RBH93_RS01700 (RBH93_01700) kdsC 352679..353233 (+) 555 WP_047438734.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  RBH93_RS01705 (RBH93_01705) lptC 353230..353790 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  RBH93_RS01710 (RBH93_01710) lptA 353777..354304 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  RBH93_RS01715 (RBH93_01715) lptB 354308..355033 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  RBH93_RS01720 (RBH93_01720) rpoN/rpoN1 355099..356538 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  RBH93_RS01725 (RBH93_01725) hpf 356559..356846 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  RBH93_RS01730 (RBH93_01730) ptsN 356849..357295 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RBH93_RS01735 (RBH93_01735) rapZ 357341..358207 (+) 867 WP_021231839.1 RNase adapter RapZ -
  RBH93_RS01740 (RBH93_01740) npr 358228..358500 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  RBH93_RS01745 (RBH93_01745) - 358518..359147 (-) 630 WP_307896065.1 DUF4310 family protein -
  RBH93_RS01750 (RBH93_01750) - 359195..359935 (-) 741 WP_307896066.1 DUF4311 domain-containing protein -
  RBH93_RS01755 (RBH93_01755) - 359975..360271 (-) 297 WP_100652517.1 DUF4312 family protein -
  RBH93_RS01760 (RBH93_01760) - 360271..360636 (-) 366 WP_307896067.1 SFCGS family glycine-rich protein -
  RBH93_RS01765 (RBH93_01765) - 360654..361013 (-) 360 WP_047438724.1 transcriptional regulator -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=871656 RBH93_RS01720 WP_005336331.1 355099..356538(+) (rpoN/rpoN1) [Aeromonas veronii strain HS1906]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=871656 RBH93_RS01720 WP_005336331.1 355099..356538(+) (rpoN/rpoN1) [Aeromonas veronii strain HS1906]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTGGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGTGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGGGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGACTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGTATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTCATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAACCACGTCCCGGCAACGGCATCAT
CCAGAGTGACTCTCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTAGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491