Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RA957_RS12470 Genome accession   NZ_CP133077
Coordinates   2473945..2475666 (-) Length   573 a.a.
NCBI ID   WP_011231871.1    Uniprot ID   Q75TB4
Organism   Geobacillus kaustophilus strain T-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2468945..2480666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA957_RS12445 (RA957_12445) - 2469707..2469955 (+) 249 WP_011231866.1 DUF2627 domain-containing protein -
  RA957_RS12450 (RA957_12450) - 2470031..2470759 (-) 729 WP_011231867.1 glycerophosphodiester phosphodiesterase -
  RA957_RS12455 (RA957_12455) - 2470869..2471021 (+) 153 WP_011231868.1 YycC family protein -
  RA957_RS12460 (RA957_12460) spo0A 2471173..2471991 (-) 819 WP_307894879.1 sporulation transcription factor Spo0A -
  RA957_RS12465 (RA957_12465) spoIVB 2472376..2473671 (-) 1296 WP_011231870.1 SpoIVB peptidase -
  RA957_RS12470 (RA957_12470) recN 2473945..2475666 (-) 1722 WP_011231871.1 DNA repair protein RecN Machinery gene
  RA957_RS12475 (RA957_12475) ahrC 2475793..2476242 (-) 450 WP_011231872.1 transcriptional regulator AhrC/ArgR -
  RA957_RS12480 (RA957_12480) - 2476299..2477147 (-) 849 WP_011231873.1 TlyA family RNA methyltransferase -
  RA957_RS12485 (RA957_12485) dxs 2477151..2479043 (-) 1893 WP_033004878.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RA957_RS12490 (RA957_12490) - 2479292..2480185 (-) 894 WP_021322371.1 polyprenyl synthetase family protein -
  RA957_RS12495 (RA957_12495) - 2480189..2480419 (-) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64295.59 Da        Isoelectric Point: 4.9678

>NTDB_id=871618 RA957_RS12470 WP_011231871.1 2473945..2475666(-) (recN) [Geobacillus kaustophilus strain T-1]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=871618 RA957_RS12470 WP_011231871.1 2473945..2475666(-) (recN) [Geobacillus kaustophilus strain T-1]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTTGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCGTGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTTGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGACGAGTTCGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCTCGCTACCGCGCCGTCTACGAGCGGTATGAGGAGCTCGGAAACAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGCTGACGTTTCAGCTGCGTGAAATCGAGCAGGCGGCGCTCGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGCTATGAGGCCCTCTCCGGA
GAGGGACGCGGGCTTGATTCCATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGGCGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AATACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTATGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTAAGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTCACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCGGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCTCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGATGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCAATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q75TB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.672

100

0.618