Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RBI12_RS17365 Genome accession   NZ_CP133054
Coordinates   3609920..3610246 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain A774     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3604920..3615246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS17345 (RBI12_17405) - 3605027..3605653 (-) 627 WP_005065779.1 FHA domain-containing protein -
  RBI12_RS17350 (RBI12_17410) gspD 3605694..3607964 (-) 2271 WP_017481932.1 type II secretion system secretin GspD -
  RBI12_RS17355 (RBI12_17415) - 3608006..3608842 (-) 837 WP_005079413.1 type II secretion system protein N -
  RBI12_RS17360 (RBI12_17420) gspN 3608842..3609585 (-) 744 WP_017481931.1 type II secretion system protein N -
  RBI12_RS17365 (RBI12_17425) hns 3609920..3610246 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RBI12_RS17370 (RBI12_17430) - 3610441..3610881 (-) 441 WP_002121251.1 thioesterase family protein -
  RBI12_RS17375 (RBI12_17435) - 3610889..3612082 (-) 1194 WP_017481927.1 membrane protein -
  RBI12_RS17380 (RBI12_17440) - 3612092..3612934 (-) 843 WP_017481926.1 hypothetical protein -
  RBI12_RS17385 (RBI12_17445) hemD 3612943..3613710 (-) 768 WP_017481925.1 uroporphyrinogen-III synthase -
  RBI12_RS17390 (RBI12_17450) hemC 3613714..3614631 (-) 918 WP_031945074.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=871564 RBI12_RS17365 WP_000801427.1 3609920..3610246(-) (hns) [Acinetobacter pittii strain A774]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=871564 RBI12_RS17365 WP_000801427.1 3609920..3610246(-) (hns) [Acinetobacter pittii strain A774]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1