Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RBI12_RS15670 Genome accession   NZ_CP133054
Coordinates   3247794..3248198 (-) Length   134 a.a.
NCBI ID   WP_017482386.1    Uniprot ID   A0A9X3TDF7
Organism   Acinetobacter pittii strain A774     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3242794..3253198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS15640 (RBI12_15700) - 3242878..3243147 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RBI12_RS15645 (RBI12_15705) rapZ 3243144..3243995 (-) 852 WP_005066272.1 RNase adapter RapZ -
  RBI12_RS15650 (RBI12_15710) panC 3244019..3244867 (-) 849 WP_017482383.1 pantoate--beta-alanine ligase -
  RBI12_RS15655 (RBI12_15715) panB 3244871..3245680 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RBI12_RS15660 (RBI12_15720) folK 3245726..3246208 (-) 483 WP_017482384.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RBI12_RS15665 (RBI12_15725) pcnB 3246205..3247668 (-) 1464 WP_017482385.1 polynucleotide adenylyltransferase PcnB -
  RBI12_RS15670 (RBI12_15730) comEA 3247794..3248198 (-) 405 WP_017482386.1 ComEA family DNA-binding protein Machinery gene
  RBI12_RS15675 (RBI12_15735) mazG 3248167..3248973 (-) 807 WP_017482387.1 nucleoside triphosphate pyrophosphohydrolase -
  RBI12_RS15680 (RBI12_15740) - 3249086..3249859 (+) 774 WP_017482388.1 SDR family oxidoreductase -
  RBI12_RS15685 (RBI12_15745) relA 3249906..3252212 (-) 2307 WP_017482389.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15483.75 Da        Isoelectric Point: 10.4871

>NTDB_id=871555 RBI12_RS15670 WP_017482386.1 3247794..3248198(-) (comEA) [Acinetobacter pittii strain A774]
MQFSMNLWKNKHNIFIILFWSVISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGLAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=871555 RBI12_RS15670 WP_017482386.1 3247794..3248198(-) (comEA) [Acinetobacter pittii strain A774]
ATGCAATTCAGCATGAATCTTTGGAAAAATAAGCACAATATTTTCATTATTTTATTTTGGAGCGTGATTTCATCAACTTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACACGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCATCAGGACAAATTCATTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGCGG
CTTTAAGAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCTAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.073

100

0.716
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

41.129

92.537

0.381