Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   RBI12_RS02580 Genome accession   NZ_CP133054
Coordinates   525878..526762 (+) Length   294 a.a.
NCBI ID   WP_017481657.1    Uniprot ID   A0AAN4S7G5
Organism   Acinetobacter pittii strain A774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520878..531762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS02555 (RBI12_02560) - 521192..522439 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  RBI12_RS02560 (RBI12_02565) wrbA 522800..523402 (+) 603 WP_005078299.1 NAD(P)H:quinone oxidoreductase -
  RBI12_RS02565 (RBI12_02570) xpt 523454..524029 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  RBI12_RS02570 (RBI12_02575) - 524102..524815 (-) 714 WP_017481658.1 DUF3108 domain-containing protein -
  RBI12_RS02575 (RBI12_02580) - 524974..525645 (-) 672 WP_014207723.1 hypothetical protein -
  RBI12_RS02580 (RBI12_02585) tonB2 525878..526762 (+) 885 WP_017481657.1 energy transducer TonB Machinery gene
  RBI12_RS02585 (RBI12_02590) ybeY 526814..527290 (-) 477 WP_017481656.1 rRNA maturation RNase YbeY -
  RBI12_RS02590 (RBI12_02595) phoL 527300..528388 (-) 1089 WP_002119513.1 PhoH family protein -
  RBI12_RS02595 (RBI12_02600) miaB 528426..529877 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33682.31 Da        Isoelectric Point: 7.6439

>NTDB_id=871542 RBI12_RS02580 WP_017481657.1 525878..526762(+) (tonB2) [Acinetobacter pittii strain A774]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPLEQSTKEIAISIRPSNEPVHQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASTGNTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKEASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=871542 RBI12_RS02580 WP_017481657.1 525878..526762(+) (tonB2) [Acinetobacter pittii strain A774]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTTAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGTGCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAAATACTGAGTTAGA
AAGTTTGCAAAAGATACAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATAAAGACAGTAGACGGAATTCAAGCGAA
GAAAGAGGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGTGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.415

100

0.874