Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RBI11_RS09850 Genome accession   NZ_CP133052
Coordinates   2057606..2058133 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain A1014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052606..2063133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS09835 (RBI11_09860) pilM 2055159..2056217 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RBI11_RS09840 (RBI11_09865) pilN 2056217..2056858 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  RBI11_RS09845 (RBI11_09870) pilO 2056855..2057595 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBI11_RS09850 (RBI11_09875) pilP 2057606..2058133 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RBI11_RS09855 (RBI11_09880) pilQ 2058201..2060366 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RBI11_RS09860 (RBI11_09885) aroK 2060378..2060947 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RBI11_RS09865 (RBI11_09890) aroB 2060976..2062058 (+) 1083 WP_057094658.1 3-dehydroquinate synthase -
  RBI11_RS09870 (RBI11_09895) - 2062074..2062949 (+) 876 WP_004745382.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=871506 RBI11_RS09850 WP_000695065.1 2057606..2058133(+) (pilP) [Acinetobacter baumannii strain A1014]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=871506 RBI11_RS09850 WP_000695065.1 2057606..2058133(+) (pilP) [Acinetobacter baumannii strain A1014]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714