Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RBI11_RS06930 Genome accession   NZ_CP133052
Coordinates   1436226..1436552 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain A1014     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1431226..1441552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS06910 (RBI11_06930) - 1431331..1431960 (-) 630 WP_031966137.1 FHA domain-containing protein -
  RBI11_RS06915 (RBI11_06935) gspD 1432001..1434271 (-) 2271 WP_057094609.1 type II secretion system secretin GspD -
  RBI11_RS06920 (RBI11_06940) - 1434313..1435149 (-) 837 WP_000870031.1 type II secretion system protein N -
  RBI11_RS06925 (RBI11_06945) gspN 1435149..1435892 (-) 744 WP_000730343.1 type II secretion system protein N -
  RBI11_RS06930 (RBI11_06950) hns 1436226..1436552 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RBI11_RS06935 (RBI11_06955) - 1436747..1437187 (-) 441 WP_000661569.1 thioesterase family protein -
  RBI11_RS06940 (RBI11_06960) - 1437195..1438388 (-) 1194 WP_057093958.1 hypothetical protein -
  RBI11_RS06945 (RBI11_06965) - 1438398..1439237 (-) 840 WP_001230201.1 hypothetical protein -
  RBI11_RS06950 (RBI11_06970) - 1439246..1440013 (-) 768 WP_057093960.1 uroporphyrinogen-III synthase -
  RBI11_RS06955 (RBI11_06975) hemC 1440018..1440935 (-) 918 WP_031946801.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=871493 RBI11_RS06930 WP_000801427.1 1436226..1436552(-) (hns) [Acinetobacter baumannii strain A1014]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=871493 RBI11_RS06930 WP_000801427.1 1436226..1436552(-) (hns) [Acinetobacter baumannii strain A1014]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1