Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   RBI10_RS02360 Genome accession   NZ_CP133047
Coordinates   484737..485621 (+) Length   294 a.a.
NCBI ID   WP_069119516.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479737..490621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS02335 (RBI10_02340) - 480051..481298 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  RBI10_RS02340 (RBI10_02345) wrbA 481659..482261 (+) 603 WP_081318513.1 NAD(P)H:quinone oxidoreductase -
  RBI10_RS02345 (RBI10_02350) xpt 482313..482888 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  RBI10_RS02350 (RBI10_02355) - 482961..483674 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  RBI10_RS02355 (RBI10_02360) - 483833..484504 (-) 672 WP_002119526.1 hypothetical protein -
  RBI10_RS02360 (RBI10_02365) tonB2 484737..485621 (+) 885 WP_069119516.1 energy transducer TonB Machinery gene
  RBI10_RS02365 (RBI10_02370) ybeY 485673..486149 (-) 477 WP_069119518.1 rRNA maturation RNase YbeY -
  RBI10_RS02370 (RBI10_02375) phoL 486159..487247 (-) 1089 WP_002119513.1 PhoH family protein -
  RBI10_RS02375 (RBI10_02380) miaB 487285..488736 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33601.15 Da        Isoelectric Point: 7.6075

>NTDB_id=871446 RBI10_RS02360 WP_069119516.1 484737..485621(+) (tonB2) [Acinetobacter pittii strain A1269]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPNNQPVVQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=871446 RBI10_RS02360 WP_069119516.1 484737..485621(+) (tonB2) [Acinetobacter pittii strain A1269]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTGTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAACAATCAGCCAGTTGTTCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCAGCAGCAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAATTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCGGCTGCTTATTTGGATAAGTTCCGTGAAAAAGTAGAGCTTTATGGCAACCGCTATTATCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

89.456

100

0.895