Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SHJJP9002_RS11545 Genome accession   NZ_CP133006
Coordinates   2373434..2374804 (-) Length   456 a.a.
NCBI ID   WP_069824873.1    Uniprot ID   -
Organism   Staphylococcus casei strain SCK7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2368434..2379804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9002_RS11530 (SHJJP9002_002305) cysE 2369460..2370101 (-) 642 WP_069824881.1 serine O-acetyltransferase -
  SHJJP9002_RS11535 (SHJJP9002_002306) gltX 2370452..2371906 (-) 1455 WP_069824871.1 glutamate--tRNA ligase -
  SHJJP9002_RS11540 (SHJJP9002_002307) - 2372298..2373356 (-) 1059 WP_069824872.1 PIN/TRAM domain-containing protein -
  SHJJP9002_RS11545 (SHJJP9002_002308) radA 2373434..2374804 (-) 1371 WP_069824873.1 DNA repair protein RadA Machinery gene
  SHJJP9002_RS11550 (SHJJP9002_002309) - 2375162..2377624 (-) 2463 WP_069824874.1 ATP-dependent Clp protease ATP-binding subunit -
  SHJJP9002_RS11555 (SHJJP9002_002310) - 2377639..2378649 (-) 1011 WP_069824875.1 protein arginine kinase -
  SHJJP9002_RS11560 (SHJJP9002_002311) - 2378642..2379193 (-) 552 WP_069824876.1 UvrB/UvrC motif-containing protein -
  SHJJP9002_RS11565 (SHJJP9002_002312) - 2379212..2379673 (-) 462 WP_046837687.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50190.59 Da        Isoelectric Point: 7.1754

>NTDB_id=871315 SHJJP9002_RS11545 WP_069824873.1 2373434..2374804(-) (radA) [Staphylococcus casei strain SCK7]
MAKKKVIFECMACGYQSPKWMGKCPSCGGWNQMEEVVEQKTASPKHGVRTRDNVSKVQKLNDIKQETTPRVKSKSDEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSHNVLYITGEESLSQTKLRAERLDEDSSQLNVFAETDLEIIHETV
KQLKPDLLVVDSIQTIFHPEINSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVANPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIVVATASSFKDQAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPETNIGGWQFPSDIQVIGVKSVNDALRYALAKQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=871315 SHJJP9002_RS11545 WP_069824873.1 2373434..2374804(-) (radA) [Staphylococcus casei strain SCK7]
TTGGCCAAAAAGAAAGTGATTTTCGAATGTATGGCTTGTGGTTATCAGTCACCAAAATGGATGGGAAAATGTCCAAGCTG
TGGTGGTTGGAATCAAATGGAAGAGGTTGTCGAGCAAAAGACAGCGAGTCCGAAGCACGGCGTACGAACTCGCGATAATG
TTTCTAAAGTACAGAAGTTAAACGACATCAAACAAGAAACTACACCGCGTGTTAAGAGTAAGTCAGATGAATTTAATCGC
GTGTTAGGTGGCGGGATTGTGAATGGTTCATTAGTCTTGATTGGTGGGGATCCTGGTATAGGGAAATCCACATTGTTATT
ACAAATTTGTGCAGCGTTATCACAATCACATAATGTTTTATATATCACTGGTGAAGAATCATTAAGCCAAACGAAATTGA
GGGCGGAAAGATTGGATGAGGATTCAAGTCAGTTAAATGTGTTTGCTGAAACAGATTTGGAAATTATACATGAAACCGTA
AAACAATTAAAACCCGATTTACTTGTTGTCGACTCTATCCAAACGATATTTCATCCTGAAATTAATTCAGCACCTGGTTC
TGTTTCGCAAGTCAGAGAAAGCACCCAAAGCCTTATGAATATTGCTAAACAAATGAATATCGCAACATTTATTGTCGGGC
ATGTTACAAAAGAAGGTCAAATTGCTGGTCCCCGCCTATTAGAACACATGGTGGATACTGTTCTTTATTTTGAAGGTGAT
GAACATCATGCCTATCGTATTTTAAGAGCGGTAAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATTTTTGAAATGAA
GCAAAGTGGATTAAAAGGCGTTGCAAACCCTTCTGAAATGTTTTTAGAAGAACGGTCAACTAACGTGCCAGGTTCTACAA
TTGTTTCTACTATGGAAGGTACGAGACCGTTATTGATAGAAGTACAAGCATTAGTCACTCCTACTACTTTTAATAATCCA
CGACGTATGGCTACAGGTATTGATCATAATCGTTTGAGTTTACTCATGGCTGTATTAGAAAAGAAAGAAAATTATTTACT
TCAGCAACAAGATGCTTATATTAAAGTTGCTGGTGGTGTAAGATTAACAGAACCGGCAGTCGACTTAGGTATCGTTGTAG
CCACAGCTTCAAGCTTTAAAGATCAAGCCGTAGATGGTTTAGATTGCTTTATCGGTGAGGTCGGCCTGACCGGAGAAGTA
AGACGTGTATCACGCATTGAACAACGTGTGCAAGAAGCGGCGAAATTAGGTTTTAAACGTGTCATTATTCCAGAGACAAA
TATAGGCGGTTGGCAATTCCCAAGCGATATTCAAGTTATAGGTGTCAAGAGTGTAAACGACGCTTTGAGATACGCTTTAG
CTAAACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)

AAA domain (AAA_25)

(68-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.217

100

0.658
  radA Streptococcus pneumoniae Rx1

58.59

99.561

0.583
  radA Streptococcus pneumoniae D39

58.59

99.561

0.583
  radA Streptococcus pneumoniae R6

58.59

99.561

0.583
  radA Streptococcus pneumoniae TIGR4

58.59

99.561

0.583
  radA Streptococcus mitis SK321

58.59

99.561

0.583
  radA Streptococcus mitis NCTC 12261

58.59

99.561

0.583