Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SHJJP9002_RS10400 Genome accession   NZ_CP133006
Coordinates   2141451..2142419 (-) Length   322 a.a.
NCBI ID   WP_069823589.1    Uniprot ID   -
Organism   Staphylococcus casei strain SCK7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2139702..2157847 2141451..2142419 within 0


Gene organization within MGE regions


Location: 2139702..2157847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9002_RS10390 (SHJJP9002_002077) - 2139702..2140505 (-) 804 WP_341636504.1 ATP-binding cassette domain-containing protein -
  SHJJP9002_RS10395 (SHJJP9002_002078) - 2140502..2141461 (-) 960 WP_069823590.1 iron chelate uptake ABC transporter family permease subunit -
  SHJJP9002_RS10400 (SHJJP9002_002079) ceuB 2141451..2142419 (-) 969 WP_069823589.1 ABC transporter permease Machinery gene
  SHJJP9002_RS10405 (SHJJP9002_002080) nrdF 2142890..2143858 (-) 969 WP_069823588.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  SHJJP9002_RS10410 (SHJJP9002_002081) nrdE 2143966..2146071 (-) 2106 WP_069823587.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  SHJJP9002_RS10415 (SHJJP9002_002082) nrdI 2146034..2146432 (-) 399 WP_069823586.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  SHJJP9002_RS10420 (SHJJP9002_002083) - 2147148..2148035 (+) 888 WP_069823585.1 DMT family transporter -
  SHJJP9002_RS10425 (SHJJP9002_002084) queF 2148050..2148550 (+) 501 WP_341636505.1 preQ(1) synthase -
  SHJJP9002_RS10430 (SHJJP9002_002085) - 2148857..2150371 (+) 1515 WP_069823583.1 peptide MFS transporter -
  SHJJP9002_RS10435 (SHJJP9002_002086) - 2150607..2152115 (+) 1509 WP_069823582.1 peptide MFS transporter -
  SHJJP9002_RS10440 (SHJJP9002_002087) - 2152226..2153167 (+) 942 WP_341636506.1 diacylglycerol kinase family protein -
  SHJJP9002_RS10445 (SHJJP9002_002088) - 2153301..2153849 (-) 549 WP_046837179.1 5'-3'-deoxyribonucleotidase -
  SHJJP9002_RS10450 (SHJJP9002_002089) hisC 2154127..2155182 (-) 1056 WP_341636507.1 histidinol-phosphate transaminase -
  SHJJP9002_RS10455 (SHJJP9002_002090) - 2155371..2156885 (-) 1515 WP_069823579.1 ABC transporter permease/substrate-binding protein -
  SHJJP9002_RS10460 (SHJJP9002_002091) - 2156885..2157847 (-) 963 WP_341636508.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35421.77 Da        Isoelectric Point: 10.2750

>NTDB_id=871313 SHJJP9002_RS10400 WP_069823589.1 2141451..2142419(-) (ceuB) [Staphylococcus casei strain SCK7]
MKFLLNGIVLFIILLLLTILSLFIGVSKVSVTDIFHLSKEQMNIIVSSRIPRTVSILISGSTLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILISLIFFPEENIMIKLAFAVTLSIAGTFLFVKLIQLIRFKDVIFVPLLGIMLGGIISSFATFMALR
TNTVQSVGNWLNGNFAIITSGRYEILYLSIPLLVLTYIFANHFTIAGMGKDFSNNLGVNYEKIINIGLFITATITALVVV
TVGTLPFLGLIVPNIVSIFRGDHLKNALPHTAMLGAIFVMFSDIIGRIVVYPYEINIGLTIGVFGTIIFIILLMKGRHHY
AN

Nucleotide


Download         Length: 969 bp        

>NTDB_id=871313 SHJJP9002_RS10400 WP_069823589.1 2141451..2142419(-) (ceuB) [Staphylococcus casei strain SCK7]
ATGAAATTTTTACTTAATGGTATTGTTTTATTTATTATTCTACTATTATTAACTATCCTTTCTTTATTTATAGGTGTAAG
TAAAGTTTCTGTTACAGATATTTTTCATTTATCTAAAGAACAGATGAATATTATTGTTTCTAGTAGAATCCCTAGAACAG
TAAGTATATTAATATCTGGGAGCACCTTGGCACTTGCAGGATTAATCATGCAACAGATGATGCAAAATAAATTTGTAAGT
CCAACTACAGCAGGAACTATGGAATGGGCTAAGTTAGGTATATTAATCTCTCTTATATTCTTTCCAGAAGAAAACATCAT
GATTAAGTTAGCATTTGCAGTTACTTTGAGCATTGCTGGAACATTTTTATTTGTAAAACTGATTCAGCTTATTCGTTTCA
AAGATGTCATTTTTGTACCGTTATTAGGCATCATGCTAGGTGGTATTATCTCTAGTTTTGCTACTTTTATGGCATTAAGA
ACTAATACAGTTCAAAGTGTTGGCAATTGGTTGAATGGGAACTTTGCAATTATCACGAGTGGAAGATATGAAATATTATA
TTTAAGTATTCCATTATTAGTACTTACATACATATTCGCAAATCATTTTACGATAGCAGGGATGGGGAAAGATTTTAGTA
ACAATTTAGGTGTGAATTATGAAAAAATAATAAACATCGGATTATTTATTACAGCTACGATTACTGCATTGGTAGTGGTG
ACAGTGGGGACATTACCATTTTTAGGATTAATTGTTCCTAATATTGTCTCTATTTTTAGAGGAGATCACTTGAAGAATGC
ATTGCCTCATACAGCGATGTTAGGAGCTATATTTGTTATGTTTTCAGATATTATAGGGAGAATTGTCGTTTATCCTTATG
AAATTAATATTGGATTAACAATTGGCGTCTTTGGCACTATTATCTTCATAATCTTGCTGATGAAAGGACGACATCATTAT
GCAAATTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.438

99.379

0.481