Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SHJJP9002_RS04145 Genome accession   NZ_CP133006
Coordinates   903166..903882 (-) Length   238 a.a.
NCBI ID   WP_069824785.1    Uniprot ID   A0A1S2MHC9
Organism   Staphylococcus casei strain SCK7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 898166..908882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9002_RS04125 (SHJJP9002_000824) - 899227..899454 (+) 228 WP_069824791.1 sulfurtransferase TusA family protein -
  SHJJP9002_RS04130 (SHJJP9002_000825) - 899601..900563 (+) 963 WP_069824782.1 LacI family DNA-binding transcriptional regulator -
  SHJJP9002_RS04135 (SHJJP9002_000826) - 900661..902145 (+) 1485 WP_069824783.1 sucrose-6-phosphate hydrolase -
  SHJJP9002_RS04140 (SHJJP9002_000827) - 902142..903107 (+) 966 WP_069824784.1 carbohydrate kinase -
  SHJJP9002_RS04145 (SHJJP9002_000828) agrA 903166..903882 (-) 717 WP_069824785.1 LytTR family DNA-binding domain-containing protein Regulator
  SHJJP9002_RS04150 (SHJJP9002_000829) - 903895..905190 (-) 1296 WP_341636863.1 GHKL domain-containing protein -
  SHJJP9002_RS04155 (SHJJP9002_000830) - 905216..905353 (-) 138 WP_046838134.1 cyclic lactone autoinducer peptide -
  SHJJP9002_RS04160 (SHJJP9002_000831) - 905350..905925 (-) 576 WP_341636864.1 accessory gene regulator AgrB -
  SHJJP9002_RS04165 (SHJJP9002_000832) - 906904..907689 (-) 786 WP_341636865.1 carbon-nitrogen family hydrolase -
  SHJJP9002_RS04170 (SHJJP9002_000833) - 907860..908489 (-) 630 WP_069824790.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27958.72 Da        Isoelectric Point: 5.2145

>NTDB_id=871291 SHJJP9002_RS04145 WP_069824785.1 903166..903882(-) (agrA) [Staphylococcus casei strain SCK7]
MKIFICEDDARQRENMISIINNYIMIEEKPMQIEVATDDPYEILERSKNTSDIGCYFLDIQLNSDINGIKLASEIRKYDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLNTSESRLKLLSKESNVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDDRFFRCHNSFVINRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=871291 SHJJP9002_RS04145 WP_069824785.1 903166..903882(-) (agrA) [Staphylococcus casei strain SCK7]
ATGAAAATATTCATATGTGAAGATGATGCAAGACAACGCGAAAATATGATATCAATCATCAACAACTACATCATGATTGA
AGAGAAACCTATGCAAATTGAAGTTGCAACTGATGATCCTTATGAAATACTAGAACGTTCAAAAAACACGAGTGACATTG
GATGTTACTTTTTAGATATTCAATTAAACTCTGATATTAATGGCATTAAACTTGCAAGTGAAATTCGTAAATATGATCCT
GTTGGTAATATTATTTTTGTTACAAGTCATAGTGAACTTACCTATCTCACTTTCGTGTATAAAGTTGCTGCTATGGACTT
CATCTTCAAAGATGACCCTGATGAATTAAAATCAAGAATTATTGATTGTCTTAATACCTCTGAATCTAGATTGAAACTAC
TTTCTAAAGAATCTAATGTGGAAACGATAGAATTAAAACGTGGCAGTAATTCTGTCTATGTTCAATATGATGATGTGATG
TTTTTCGAATCCTCTACTAAATCACATCGATTAATTGCTCATTTAGATAATCGTCAAATCGAATTTTACGGCAATCTTAA
AGAGCTGGATCAACTTGATGATAGATTCTTCCGATGTCATAATAGTTTTGTTATAAATCGACACAACATAGAATCTATAG
ATTCTAAATCACGTATTGTTTACTTTAAAAACAACGAACATTGCTATGCTTCAGTGAGAAATGTCAAGAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2MHC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857