Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WHU60_RS12915 Genome accession   NZ_CP148398
Coordinates   2602536..2603003 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323HEC0009     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2597536..2608003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU60_RS12870 (WHU60_12870) rplP 2597646..2598056 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  WHU60_RS12875 (WHU60_12875) rpsC 2598069..2598770 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  WHU60_RS12880 (WHU60_12880) rplV 2598788..2599120 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  WHU60_RS12885 (WHU60_12885) rpsS 2599135..2599413 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  WHU60_RS12890 (WHU60_12890) rplB 2599430..2600251 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  WHU60_RS12895 (WHU60_12895) rplW 2600269..2600571 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  WHU60_RS12900 (WHU60_12900) rplD 2600568..2601173 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  WHU60_RS12905 (WHU60_12905) rplC 2601184..2601813 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  WHU60_RS12910 (WHU60_12910) rpsJ 2601846..2602157 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  WHU60_RS12915 (WHU60_12915) pilD 2602536..2603003 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  WHU60_RS12920 (WHU60_12920) bfr 2603000..2603476 (-) 477 WP_000675515.1 bacterioferritin -
  WHU60_RS12925 (WHU60_12925) bfd 2603549..2603743 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  WHU60_RS12930 (WHU60_12930) tuf 2603926..2605110 (-) 1185 WP_000031783.1 elongation factor Tu -
  WHU60_RS12935 (WHU60_12935) fusA 2605181..2607295 (-) 2115 WP_000124700.1 elongation factor G -
  WHU60_RS12940 (WHU60_12940) rpsG 2607392..2607862 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=871291 WHU60_RS12915 WP_000339836.1 2602536..2603003(+) (pilD) [Escherichia coli strain Z1323HEC0009]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=871291 WHU60_RS12915 WP_000339836.1 2602536..2603003(+) (pilD) [Escherichia coli strain Z1323HEC0009]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361