Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RBH01_RS25350 Genome accession   NZ_CP132997
Coordinates   5422885..5423442 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ZYPA162     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5417885..5428442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH01_RS25330 (RBH01_25335) pilR 5419161..5420498 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  RBH01_RS25335 (RBH01_25340) thiO 5420544..5421638 (-) 1095 WP_094009641.1 glycine oxidase ThiO -
  RBH01_RS25340 (RBH01_25345) - 5421773..5422282 (+) 510 WP_034037343.1 Tfp pilus assembly protein FimT/FimU -
  RBH01_RS25345 (RBH01_25350) - 5422388..5422894 (+) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  RBH01_RS25350 (RBH01_25355) pilV 5422885..5423442 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  RBH01_RS25355 (RBH01_25360) pilW 5423439..5424263 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  RBH01_RS25360 (RBH01_25365) pilX 5424260..5424847 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  RBH01_RS25365 (RBH01_25370) pilY1 5424859..5428344 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=871239 RBH01_RS25350 WP_003119423.1 5422885..5423442(+) (pilV) [Pseudomonas aeruginosa strain ZYPA162]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=871239 RBH01_RS25350 WP_003119423.1 5422885..5423442(+) (pilV) [Pseudomonas aeruginosa strain ZYPA162]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995