Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU26_RS08900 Genome accession   NZ_CP148391
Coordinates   1798760..1799389 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323HEC0010     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793760..1804389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU26_RS08885 (WHU26_08880) helD 1794002..1796056 (-) 2055 WP_001352492.1 DNA helicase IV -
  WHU26_RS08890 (WHU26_08885) yccF 1796179..1796625 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHU26_RS08895 (WHU26_08890) yccS 1796635..1798797 (+) 2163 WP_137566697.1 YccS family putative transporter -
  WHU26_RS08900 (WHU26_08895) sxy/tfoX 1798760..1799389 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU26_RS08905 (WHU26_08900) sulA 1799608..1800117 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU26_RS08910 (WHU26_08905) ompA 1800474..1801514 (+) 1041 WP_000750416.1 porin OmpA -
  WHU26_RS08915 (WHU26_08910) matP 1801590..1802042 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU26_RS08920 (WHU26_08915) ycbZ 1802228..1803988 (+) 1761 WP_137566696.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=871192 WHU26_RS08900 WP_000839153.1 1798760..1799389(-) (sxy/tfoX) [Escherichia coli strain Z1323HEC0010]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=871192 WHU26_RS08900 WP_000839153.1 1798760..1799389(-) (sxy/tfoX) [Escherichia coli strain Z1323HEC0010]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1