Detailed information NTG0871034

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RAS12_RS26615
• Genome accession: NZ_CP132976
• Coordinates: 5873262..5874311 (+)
• Length: 349 a.a.
• NCBI ID: WP_306951631.1
• Uniprot ID: -
• Organism: Achromobacter seleniivolatilans strain R39
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5868262..5879311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAS12_RS26590 (RAS12_26590)	-	5869706..5870092 (+)	387	WP_306943102.1	MOSC N-terminal beta barrel domain-containing protein	-
RAS12_RS26595 (RAS12_26595)	-	5870117..5871340 (-)	1224	WP_306943104.1	benzoate/H(+) symporter BenE family transporter	-
RAS12_RS26600 (RAS12_26600)	-	5871337..5871588 (-)	252	WP_306943107.1	YfhL family 4Fe-4S dicluster ferredoxin	-
RAS12_RS26605 (RAS12_26605)	coaD	5871697..5872200 (-)	504	WP_006227601.1	pantetheine-phosphate adenylyltransferase	-
RAS12_RS26610 (RAS12_26610)	rsmD	5872259..5872825 (-)	567	WP_306951629.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RAS12_RS26615 (RAS12_26615)	pilA	5873262..5874311 (+)	1050	WP_306951631.1	signal recognition particle-docking protein FtsY	Machinery gene
RAS12_RS26620 (RAS12_26620)	-	5874382..5876040 (-)	1659	WP_306943109.1	CYTH and CHAD domain-containing protein	-
RAS12_RS26625 (RAS12_26625)	phnE	5876278..5877102 (-)	825	WP_306943111.1	phosphonate ABC transporter, permease protein PhnE	-
RAS12_RS26630 (RAS12_26630)	phnE	5877099..5877983 (-)	885	WP_306943113.1	phosphonate ABC transporter, permease protein PhnE	-
RAS12_RS26635 (RAS12_26635)	phnC	5877980..5878750 (-)	771	WP_306943115.1	phosphonate ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 349 a.a.
• Molecular weight: 36145.71 Da
• Isoelectric Point: 8.5484

>NTDB_id=871034 RAS12_RS26615 WP_306951631.1 5873262..5874311(+) (pilA) [Achromobacter seleniivolatilans strain R39]
MPAPAPVPAPATAPVSAPVPATASAPAVVQTPVTAPVPAPVAEAPKKASWLSRLKQGLSRTGQSIGGIFIGVKVDENLFE
ELESALIMADAGLEATEKLLTALRARVKKERIEDPALVKTALRQLLADHLRPLERAFNLTSAKPLVVMIAGVNGAGKTTS
IGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVSVISQDGGDPAAVAFDAVNAGRARGMGVVMVDTAGRLPTQ
LHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPI
PVYWIGVGESLEDLQPFVADEFAAALLSD

Nucleotide

• Length: 1050 bp

>NTDB_id=871034 RAS12_RS26615 WP_306951631.1 5873262..5874311(+) (pilA) [Achromobacter seleniivolatilans strain R39]
ATTCCAGCGCCAGCACCGGTCCCAGCACCCGCTACAGCTCCGGTTTCAGCGCCTGTACCGGCCACAGCATCCGCACCTGC
GGTTGTGCAGACGCCTGTCACGGCTCCAGTCCCGGCCCCCGTCGCCGAAGCGCCCAAAAAGGCGTCCTGGCTGTCCCGCT
TGAAGCAGGGTTTGTCGCGCACCGGTCAAAGCATTGGCGGCATCTTCATCGGCGTCAAGGTCGACGAAAACCTGTTCGAG
GAACTCGAATCGGCGCTCATTATGGCCGATGCGGGTCTGGAAGCCACCGAGAAGCTCCTGACCGCACTGCGTGCCCGGGT
CAAAAAAGAGCGCATCGAAGACCCCGCGCTGGTCAAGACGGCCTTGCGCCAGTTGCTGGCCGACCACCTGCGCCCGCTGG
AACGCGCGTTCAATCTGACGAGCGCCAAGCCGCTGGTTGTCATGATTGCAGGCGTGAACGGCGCAGGCAAGACGACATCG
ATTGGCAAGCTGGCCCACACTTTCCAACGCCAGGGGGCAAGTGTATTGCTGGCCGCTGGCGATACCTTCCGCGCGGCCGC
CCGCGAGCAGCTTGTGGAATGGGGCAGCCGGAATAACGTCAGCGTGATTTCGCAGGATGGCGGTGATCCGGCCGCCGTTG
CGTTTGATGCTGTCAACGCAGGCCGCGCGCGCGGCATGGGCGTGGTGATGGTGGACACGGCGGGCCGCTTGCCCACGCAG
TTGCACCTGATGGAAGAACTGAAAAAGATCCGCCGCGTCATCGGCAAGGCGGACGCGTCCGCCCCGCACGAAGTGCTGCT
GGTGGTGGACGGCAACACGGGTCAGAACGCGTTGGCGCAGATCCGCGCATTCGATGCGGCGATCACGCTGACAGGGCTGG
TCGTGACCAAGCTGGACGGCACGGCCAAGGGCGGCACTTTGGCCGCCGTTGCTGCGGGCAGCCAGGGCGTGCGTCCGATT
CCGGTGTATTGGATTGGCGTTGGCGAAAGTCTGGAAGACTTGCAGCCTTTCGTCGCCGACGAGTTCGCGGCGGCTTTGCT
GTCCGATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (64-124)

• SRP54-type protein, GTPase domain (SRP54) (145-347)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	57.98	87.966	0.51