Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RBB83_RS22940 Genome accession   NZ_CP132974
Coordinates   5180915..5181868 (-) Length   317 a.a.
NCBI ID   WP_028541802.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain JJ21     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5175915..5186868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB83_RS22915 (RBB83_22905) - 5176261..5177172 (-) 912 WP_075154763.1 aldo/keto reductase -
  RBB83_RS22920 (RBB83_22910) - 5177453..5178196 (-) 744 WP_053326120.1 alpha/beta hydrolase-fold protein -
  RBB83_RS22925 (RBB83_22915) - 5178230..5179210 (-) 981 WP_075154764.1 siderophore ABC transporter substrate-binding protein -
  RBB83_RS22930 (RBB83_22920) - 5179223..5179981 (-) 759 WP_075154765.1 ATP-binding cassette domain-containing protein -
  RBB83_RS22935 (RBB83_22925) - 5179975..5180925 (-) 951 WP_069080667.1 iron chelate uptake ABC transporter family permease subunit -
  RBB83_RS22940 (RBB83_22930) ceuB 5180915..5181868 (-) 954 WP_028541802.1 ABC transporter permease Machinery gene
  RBB83_RS22945 (RBB83_22935) - 5182197..5182874 (+) 678 WP_075154766.1 response regulator transcription factor -
  RBB83_RS22950 (RBB83_22940) - 5182871..5183788 (+) 918 WP_075155086.1 HAMP domain-containing sensor histidine kinase -
  RBB83_RS22955 (RBB83_22945) - 5183897..5184574 (+) 678 WP_075154767.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=871004 RBB83_RS22940 WP_028541802.1 5180915..5181868(-) (ceuB) [Paenibacillus peoriae strain JJ21]
MKLRYLIVAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSIPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=871004 RBB83_RS22940 WP_028541802.1 5180915..5181868(-) (ceuB) [Paenibacillus peoriae strain JJ21]
ATGAAATTGCGTTATTTAATAGTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCAGCAGGATTTTGGACAAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGAGACTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTATTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTAGTCAGCATGTATATGGGGGATAATCTTAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTTTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508