Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RBB60_RS15585 Genome accession   NZ_CP132966
Coordinates   3408802..3409911 (-) Length   369 a.a.
NCBI ID   WP_395972163.1    Uniprot ID   -
Organism   Chryseobacterium cucumeris strain PcE1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3403802..3414911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB60_RS15560 - 3404729..3405700 (+) 972 WP_202841939.1 ion channel -
  RBB60_RS15565 - 3405700..3406188 (+) 489 WP_202841937.1 YkgJ family cysteine cluster protein -
  RBB60_RS15570 - 3406409..3406711 (+) 303 WP_110009093.1 hypothetical protein -
  RBB60_RS15575 - 3406769..3407122 (-) 354 WP_202841929.1 iron chaperone -
  RBB60_RS15580 gdhA 3407253..3408611 (-) 1359 WP_062673086.1 NADP-specific glutamate dehydrogenase -
  RBB60_RS15585 dprA 3408802..3409911 (-) 1110 WP_395972163.1 DNA-processing protein DprA Machinery gene
  RBB60_RS15590 - 3409945..3410712 (-) 768 WP_227941208.1 rhomboid family intramembrane serine protease -
  RBB60_RS15595 - 3410962..3411888 (+) 927 WP_395972166.1 DUF3078 domain-containing protein -
  RBB60_RS15600 - 3412115..3413038 (+) 924 WP_202841914.1 DUF3078 domain-containing protein -
  RBB60_RS15605 sufD 3413111..3414418 (-) 1308 WP_395974902.1 Fe-S cluster assembly protein SufD -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41237.93 Da        Isoelectric Point: 6.8281

>NTDB_id=870945 RBB60_RS15585 WP_395972163.1 3408802..3409911(-) (dprA) [Chryseobacterium cucumeris strain PcE1]
MNSEEYFYAIALRECSQIGDIHFHKLVHTFGSAQEVWKRAKKEYKQLDGIGQKTVSDIGNTSHLEFAEDELNFCEKNNIQ
IRLKHLKETPSLLNECNDAPAILYQKGNIENIQPKVSIVGTRNMTAYGKQFLDDFFEATQSSKYVTVSGLALGIDKEVHE
QSIRHQKPTVAVLAHGFKYLYPAKNRKLSEKILLEGGALITEFSSSRKPDRENFIQRNRIVAGVSPATIVVETGFGGGSV
STAAFANDYNRDVFALPGKITDSSSQGCNQLIFHNKATAISTVKDLIGLLGLNEPKEKMEELFPYSETITQLSDNQNLIY
QSVKDQPQISLDDLAQKIDLPTHKILPIILELELLGKVKSFSGRQFIAI

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=870945 RBB60_RS15585 WP_395972163.1 3408802..3409911(-) (dprA) [Chryseobacterium cucumeris strain PcE1]
ATGAATTCCGAAGAATACTTCTATGCCATCGCCCTCCGCGAGTGCAGCCAGATTGGCGATATCCATTTTCATAAGCTTGT
CCATACTTTCGGAAGCGCCCAGGAGGTCTGGAAAAGAGCAAAAAAAGAGTATAAACAACTTGATGGAATAGGACAGAAAA
CAGTTTCAGATATTGGAAATACATCTCATTTGGAATTTGCAGAAGATGAATTAAATTTTTGCGAAAAAAATAATATTCAA
ATCAGGCTGAAACACCTTAAAGAAACGCCCTCCCTGCTTAACGAATGTAATGACGCACCGGCTATCCTTTATCAAAAAGG
GAATATTGAAAATATACAACCTAAGGTAAGTATTGTAGGAACCCGGAATATGACAGCGTATGGGAAACAATTCCTTGACG
ATTTTTTCGAAGCGACACAATCTTCAAAATATGTAACGGTGAGCGGCCTCGCTTTGGGAATCGACAAAGAGGTTCACGAA
CAGTCTATTCGTCATCAAAAACCTACGGTGGCTGTTCTTGCCCATGGTTTTAAATATTTATATCCTGCCAAAAACAGAAA
ACTATCTGAAAAAATTTTACTGGAAGGTGGTGCATTAATCACAGAGTTTAGTTCATCCAGAAAACCCGATCGGGAAAACT
TCATCCAGAGAAACAGAATTGTGGCAGGAGTATCTCCGGCAACGATTGTAGTGGAAACCGGTTTTGGAGGAGGCTCTGTA
AGCACCGCAGCCTTTGCTAATGATTATAATCGTGATGTTTTTGCACTGCCTGGAAAAATTACGGACAGCTCCAGCCAGGG
TTGTAATCAGCTGATTTTCCATAATAAAGCGACAGCCATTTCTACCGTGAAAGACCTTATCGGACTCCTTGGATTAAATG
AACCCAAAGAAAAAATGGAAGAGTTATTTCCTTATAGTGAGACTATCACCCAATTATCTGATAATCAAAACTTAATATAT
CAATCTGTTAAAGACCAGCCTCAGATTTCTTTAGATGATCTGGCACAGAAAATTGATCTTCCTACCCACAAAATCTTACC
AATAATTTTGGAATTGGAACTTTTAGGGAAAGTAAAATCATTTTCCGGGAGGCAATTCATAGCAATTTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(310-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

50

99.187

0.496