Detailed information NTG0870940

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: RBB60_RS11595
• Genome accession: NZ_CP132966
• Coordinates: 2538585..2539934 (+)
• Length: 449 a.a.
• NCBI ID: WP_110008141.1
• Uniprot ID: -
• Organism: Chryseobacterium cucumeris strain PcE1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2533585..2544934

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBB60_RS11580	yidC	2534064..2535863 (-)	1800	WP_110008138.1	membrane protein insertase YidC	-
RBB60_RS11585	-	2536042..2537649 (-)	1608	WP_110008139.1	CTP synthase	-
RBB60_RS11590	-	2537875..2538444 (-)	570	WP_110008140.1	YceI family protein	-
RBB60_RS11595	radA	2538585..2539934 (+)	1350	WP_110008141.1	DNA repair protein RadA	Machinery gene
RBB60_RS11600	-	2540331..2540924 (+)	594	WP_202841363.1	ACP phosphodiesterase	-
RBB60_RS11605	-	2540930..2541445 (-)	516	WP_202841365.1	DUF6702 family protein	-
RBB60_RS11610	-	2541523..2544741 (-)	3219	WP_395971682.1	S8/S53 family peptidase	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49971.55 Da
• Isoelectric Point: 6.5083

>NTDB_id=870940 RBB60_RS11595 WP_110008141.1 2538585..2539934(+) (radA) [Chryseobacterium cucumeris strain PcE1]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNTLVEEVVEKPSHKTPPFSKTKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide

• Length: 1350 bp

>NTDB_id=870940 RBB60_RS11595 WP_110008141.1 2538585..2539934(+) (radA) [Chryseobacterium cucumeris strain PcE1]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAGTATCCTCAATGGCTGGGGCAATGTAAAAACTG
TGGAGAGTGGAATACATTAGTGGAAGAGGTTGTAGAAAAACCTTCTCACAAAACGCCTCCCTTTTCGAAAACCAAACAAC
ATGTTATCAATATTGTTGAAGTGGAAACGAGCGAAGAGCCGAGAATAAAAACACCTTCCGAAGAGCTGAACCGTGTTTTA
GGAGGCGGCATCGTTTTAGGTTCTGTAACTTTGATTGGTGGTGAACCGGGAATCGGGAAATCTACCCTTCTGCTTCAGCT
TGCTTTAAAAATGAAGAAAAAAATCTTCTATGTTTCCGGGGAAGAAAGTGCTTCTCAGATCAAAATGAGAGCAGACAGGC
TTACGGATATTCAGAATCCGAACTGTTTTCTTTTTACTGAAACTTCACTGGAAAAAATCCTTCATGAGGCCAAAAAACTG
GAGCCGGATTTCATGATCATCGATTCTATACAGACGCTGCAGTCTCAGCTGATAGAGAGTTCTCCGGGAACCGTATCCCA
AATCCGGGAATGCTCCAATGAGATCATCAAATATGCCAAAGAAAACAATACTCCGGTATTTCTTGTAGGCCACATCACCA
AAGACGGACAGATTGCCGGGCCAAAGGTTCTTGAGCACATGGTGGATGTTGTTCTGAATTTTGATGGAGACAGGAATCAC
CTGTTCAGATTACTAAGAGCCAATAAAAACCGTTTCGGGTCCACTTCAGAAATCGGAATTTATGAAATGATCTCACAGGG
ATTGAAAGAGATTAAAAACCCTTCGGAAATATTGATTACCAAGAAGTTTGAGGAACTTTCAGGGAACTCCGTTGCAGTAA
CTCTGGAAGGAAACAGACCTATGCTTCTTGAAATACAGGCACTGGTAAGTACCGCCGTTTATGGTACTCCTCAAAGAAGC
AGCACCGGTTTTGATTCCAAAAGGTTGAATATGCTTTTAGCCGTACTGGAAAAAAGAGCTGGTTTTCAATTGGGGGCAAA
AGACGTTTTCCTTAATATTACCGGAGGAATAAAGACAGACGATCCGGCACTGGATCTGGCGGTGATCGCTTCTGTTCTTT
CATCCAACGAAGATATTGCTATTTCCGAACATTACTGCTTTGCCGGAGAAATTGGTCTGAGTGGTGAAATCCGTCCGGTA
GCCCAGATTGAGCAGAGAATTACTGAAGCAGAAAAACTGGGTTATGAAAAAATATTTGTTTCCAACCTTAATAAAATCCC
GAAAAGAAAATTTGGAATCAAGATTGAAGAAGTGAGTAAAATTGAGGATTTTCACGAGAGACTGTTCTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

• AAA domain (AAA_25) (64-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.115	100	0.494
radA	Streptococcus pneumoniae Rx1	48.465	100	0.492
radA	Streptococcus pneumoniae D39	48.465	100	0.492
radA	Streptococcus pneumoniae R6	48.465	100	0.492
radA	Streptococcus pneumoniae TIGR4	48.465	100	0.492
radA	Streptococcus mitis NCTC 12261	48.465	100	0.492
radA	Streptococcus mitis SK321	50.355	94.209	0.474