Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU33_RS24015 Genome accession   NZ_CP148374
Coordinates   4852616..4853245 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323HEC0108     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4847616..4858245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU33_RS23995 (WHU33_23995) ycbZ 4848006..4849766 (-) 1761 WP_000156526.1 Lon protease family protein -
  WHU33_RS24000 (WHU33_24000) matP 4849952..4850404 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  WHU33_RS24005 (WHU33_24005) ompA 4850479..4851531 (-) 1053 WP_000750419.1 porin OmpA -
  WHU33_RS24010 (WHU33_24010) sulA 4851888..4852397 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU33_RS24015 (WHU33_24015) sxy/tfoX 4852616..4853245 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU33_RS24020 (WHU33_24020) yccS 4853208..4855370 (-) 2163 WP_000875023.1 YccS family putative transporter -
  WHU33_RS24025 (WHU33_24025) yccF 4855380..4855826 (-) 447 WP_001261231.1 YccF domain-containing protein -
  WHU33_RS24030 (WHU33_24030) helD 4855949..4858003 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=870927 WHU33_RS24015 WP_000839153.1 4852616..4853245(+) (sxy/tfoX) [Escherichia coli strain Z1323HEC0108]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=870927 WHU33_RS24015 WP_000839153.1 4852616..4853245(+) (sxy/tfoX) [Escherichia coli strain Z1323HEC0108]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1