Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RBB56_RS02540 Genome accession   NZ_CP132957
Coordinates   525134..526516 (-) Length   460 a.a.
NCBI ID   WP_306720838.1    Uniprot ID   -
Organism   Kineothrix sp. MB12-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 520134..531516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB56_RS02520 (RBB56_02525) lspA 520149..520703 (+) 555 WP_306720834.1 signal peptidase II -
  RBB56_RS02525 (RBB56_02530) - 520734..521606 (-) 873 WP_306720835.1 EamA family transporter -
  RBB56_RS02530 (RBB56_02535) - 521633..523381 (-) 1749 WP_306720836.1 ABC transporter ATP-binding protein -
  RBB56_RS02535 (RBB56_02540) - 523381..525120 (-) 1740 WP_306720837.1 ABC transporter ATP-binding protein -
  RBB56_RS02540 (RBB56_02545) radA 525134..526516 (-) 1383 WP_306720838.1 DNA repair protein RadA Machinery gene
  RBB56_RS02545 (RBB56_02550) - 526634..527044 (-) 411 WP_306720839.1 endosialidase -
  RBB56_RS02550 (RBB56_02555) - 527155..529608 (-) 2454 WP_306720840.1 ATP-dependent Clp protease ATP-binding subunit -
  RBB56_RS02555 (RBB56_02560) - 529608..529985 (-) 378 WP_306720841.1 GntR family transcriptional regulator -
  RBB56_RS02560 (RBB56_02565) - 530117..531490 (-) 1374 WP_306720842.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49715.51 Da        Isoelectric Point: 6.9065

>NTDB_id=870871 RBB56_RS02540 WP_306720838.1 525134..526516(-) (radA) [Kineothrix sp. MB12-C1]
MAKSKSTMVFFCQDCGHESSKWMGQCPGCKAWNTFVEERVNIGTKGLSSTVKSGNSIARRAEPSKLSEVSMGSEERTSTR
MEELDRVLGGGIVPGSLTLVGGDPGIGKSTLLLQVCQKLAGAGHKVLYLSGEESLRQIKIRANRIGEFNDNLLLLCETNL
SVIEETLKEIKPDIAVIDSIQTMYSEEVSAAPGSVSQVRESTNLFLQLAKGMNISIFLVGHVTKEGTVAGPRVLEHMVDT
VLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMRGEGLIEVKNPSEFMLNGRPEEASGSVVTCSMEGSRPILLEIQALVC
GSNFGIPRRQAIGTDFNRVNLLMAVLEKRVGLQMSGCDAYVNLAGGIRMAEPAIDLGIVMAIVSSFKNRAIDDKIIAFGE
VGLSGEVRAVSMAQQRVQEAGKLGFTTCILPAVCLESLKGMEKGMKLIGVRSVRDAIDLI

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=870871 RBB56_RS02540 WP_306720838.1 525134..526516(-) (radA) [Kineothrix sp. MB12-C1]
ATGGCAAAGAGCAAAAGCACAATGGTATTTTTCTGCCAGGATTGTGGTCATGAATCGTCGAAATGGATGGGACAATGTCC
CGGATGCAAGGCATGGAATACTTTTGTAGAGGAAAGGGTAAATATAGGTACTAAAGGACTTAGCAGTACGGTGAAATCAG
GGAACTCTATAGCCAGAAGGGCGGAGCCTTCGAAGTTATCTGAGGTTTCCATGGGGAGCGAAGAGAGAACAAGTACCCGG
ATGGAAGAACTCGATCGAGTGCTGGGGGGAGGAATTGTTCCCGGTTCCTTAACATTAGTGGGAGGCGATCCGGGAATCGG
TAAATCGACACTTTTGCTTCAAGTTTGTCAGAAGCTGGCAGGGGCAGGTCATAAGGTATTATATCTTTCCGGTGAGGAGT
CTCTAAGACAGATTAAGATACGCGCTAATCGAATCGGAGAGTTTAACGATAATCTTTTGCTCTTATGTGAAACGAATCTA
TCTGTTATCGAAGAGACTTTGAAGGAAATAAAGCCGGATATCGCGGTAATTGACTCTATCCAAACGATGTATAGCGAGGA
GGTATCGGCAGCGCCCGGCAGCGTATCCCAGGTGAGAGAATCAACGAATCTCTTCTTGCAGCTCGCGAAGGGAATGAATA
TCTCTATTTTTCTCGTAGGTCATGTAACAAAAGAAGGGACAGTGGCAGGACCGAGGGTATTGGAGCATATGGTGGATACG
GTGCTTTATTTCGAAGGAGACAGGCACGCTTCTTACCGTATATTACGCGGTGTGAAGAATCGATTTGGATCGACGAATGA
AATCGGCGTTTTCGAGATGAGGGGAGAAGGATTGATCGAGGTGAAGAATCCTTCGGAGTTTATGTTGAATGGAAGACCGG
AGGAGGCAAGCGGATCGGTAGTTACTTGCTCTATGGAAGGAAGCCGCCCTATTCTGTTGGAGATACAGGCACTTGTATGC
GGCAGTAATTTCGGTATTCCCAGGCGTCAGGCAATCGGTACCGATTTCAATCGGGTGAATCTTCTGATGGCAGTGCTGGA
AAAGAGAGTCGGCTTACAGATGTCAGGCTGCGATGCTTATGTGAACCTTGCCGGAGGTATCCGCATGGCAGAGCCAGCTA
TCGATTTGGGAATCGTAATGGCCATCGTTTCGAGCTTCAAGAACCGTGCCATCGATGATAAGATAATCGCTTTCGGAGAA
GTAGGATTAAGTGGTGAGGTACGTGCTGTCAGCATGGCACAGCAGAGGGTGCAGGAAGCGGGGAAACTTGGATTTACCAC
CTGTATTCTGCCTGCAGTCTGCTTAGAGAGTCTGAAAGGAATGGAAAAGGGAATGAAACTAATCGGGGTCAGATCGGTAC
GTGATGCCATTGACCTCATATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(61-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.142

99.348

0.548
  radA Streptococcus mitis NCTC 12261

52.505

99.783

0.524
  radA Streptococcus mitis SK321

52.505

99.783

0.524
  radA Streptococcus pneumoniae TIGR4

52.298

99.348

0.52
  radA Streptococcus pneumoniae R6

52.298

99.348

0.52
  radA Streptococcus pneumoniae Rx1

52.298

99.348

0.52
  radA Streptococcus pneumoniae D39

52.298

99.348

0.52