Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   Q8T15_RS13465 Genome accession   NZ_CP132922
Coordinates   2877558..2879063 (+) Length   501 a.a.
NCBI ID   WP_035971708.1    Uniprot ID   A0A892I7Y7
Organism   Burkholderia dolosa strain N149     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2872558..2884063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8T15_RS13440 kdsD 2873807..2874790 (+) 984 WP_035973266.1 arabinose 5-phosphate isomerase KdsD -
  Q8T15_RS13445 - 2874790..2875326 (+) 537 WP_306714532.1 HAD family hydrolase -
  Q8T15_RS13450 lptC 2875330..2875944 (+) 615 WP_006763376.1 LPS export ABC transporter periplasmic protein LptC -
  Q8T15_RS13455 lptA 2875965..2876630 (+) 666 WP_176077212.1 lipopolysaccharide transport periplasmic protein LptA -
  Q8T15_RS13460 lptB 2876627..2877403 (+) 777 WP_176077213.1 LPS export ABC transporter ATP-binding protein -
  Q8T15_RS13465 rpoN/rpoN1 2877558..2879063 (+) 1506 WP_035971708.1 RNA polymerase factor sigma-54 Machinery gene
  Q8T15_RS13470 hpf 2879222..2879581 (+) 360 WP_006763372.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  Q8T15_RS13475 - 2879777..2880289 (+) 513 WP_035971706.1 PTS sugar transporter subunit IIA -
  Q8T15_RS13480 hprK 2880416..2881384 (+) 969 WP_010090664.1 HPr(Ser) kinase/phosphatase -
  Q8T15_RS13485 rapZ 2881451..2882359 (+) 909 WP_006763369.1 RNase adapter RapZ -
  Q8T15_RS13490 - 2882386..2883021 (+) 636 WP_006763368.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54790.95 Da        Isoelectric Point: 4.8740

>NTDB_id=870775 Q8T15_RS13465 WP_035971708.1 2877558..2879063(+) (rpoN/rpoN1) [Burkholderia dolosa strain N149]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWISSPLRVAADGSLIAQTPLAPNAEPQA
TNGSSASSERAERDEPAGADEYDGYGTGDGNDGPQWNLDEFGRANGASDDDDLPPLQVQEAATSLRDHLAAQLRVTQAGP
RDRALVMFLIESLDDDGYLTASLDEVLADLPPELEVDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALDIVSQHLELLAARDFTRLRKHLKATDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVVP
RLRINNLYANILRNSRGDPSTGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=870775 Q8T15_RS13465 WP_035971708.1 2877558..2879063(+) (rpoN/rpoN1) [Burkholderia dolosa strain N149]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACATCTGGCGCTGACGCCTCAGCTGCAGCAGTCGATCCGGCTCCTGCA
GCTGTCGACGCTCGAATTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAATCCGCTGCTCGAGAACGACGACGAATGGA
TCTCCAGCCCGCTGCGCGTCGCGGCGGACGGGTCGCTGATCGCACAGACGCCGCTCGCGCCGAACGCCGAACCTCAAGCG
ACGAACGGCAGCAGCGCGTCGAGCGAGCGCGCCGAACGCGACGAGCCCGCCGGCGCCGACGAATACGACGGCTACGGAAC
CGGCGACGGCAACGACGGCCCGCAATGGAACCTCGACGAATTCGGCCGCGCGAACGGCGCGTCGGACGACGACGATCTCC
CGCCGCTGCAGGTGCAGGAGGCCGCGACGTCGCTGCGCGATCACCTCGCCGCGCAGCTGCGCGTCACGCAGGCCGGCCCG
CGCGACCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTATCTGACCGCGTCGCTCGACGAAGTGCT
CGCCGATCTGCCGCCCGAACTCGAAGTCGATTGCGACGAACTGAACGCGGCGCTTGCACTGCTGCACAGCTTCGACCCGG
CGGGCGTCGGCGCCCGTTCCGCGTCCGAATGCCTGAAGCTGCAGTTGCTGCGCCTCGATCCGTCCCCGACACGTACGCTC
GCGCTGGACATCGTGTCGCAGCACCTGGAGCTGCTCGCCGCGCGCGACTTCACGCGGCTGCGCAAGCATCTGAAGGCGAC
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTCGAGCCGTTCCCCGGCGCCGCATACGGGAAGGCCGAGG
CCGACTACGTCGTCCCGGACATCATCGTGAAAAAGGCCGGCCAGGGATGGCTCGCGGAACTCAATCCGGAGGTCGTGCCG
CGCCTGCGGATCAACAATCTCTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGACCGGCTCGCTGAAGCAGCA
GCTTCAGGAAGCGCGCTGGCTGATCAAGAACATTCAGCAGCGTTTCGACACGATTCTGCGTGTCGCACAGGCCATTGTCG
AACGTCAGAAGAATTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGCAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCGCACGTCTCGACCGACACCGGTGGCGCCGCCTCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCCGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAAGGCTTCGTGGTCGCGCGC
CGCACGGTTGCCAAGTATCGCGAAGCCCTCAGGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.577

100

0.693