Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RBB55_RS01275 Genome accession   NZ_CP132915
Coordinates   265112..265438 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain A207     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 260112..270438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS01250 (RBB55_01250) hemC 260729..261646 (+) 918 WP_031956197.1 hydroxymethylbilane synthase -
  RBB55_RS01255 (RBB55_01255) - 261651..262418 (+) 768 WP_004836281.1 uroporphyrinogen-III synthase -
  RBB55_RS01260 (RBB55_01260) - 262427..263266 (+) 840 WP_004836279.1 hypothetical protein -
  RBB55_RS01265 (RBB55_01265) - 263276..264469 (+) 1194 WP_004836276.1 hypothetical protein -
  RBB55_RS01270 (RBB55_01270) - 264477..264917 (+) 441 WP_000661569.1 thioesterase family protein -
  RBB55_RS01275 (RBB55_01275) hns 265112..265438 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RBB55_RS01280 (RBB55_01280) gspN 265770..266513 (+) 744 WP_000730343.1 type II secretion system protein N -
  RBB55_RS01285 (RBB55_01285) - 266513..267349 (+) 837 WP_000862737.1 type II secretion system protein N -
  RBB55_RS01290 (RBB55_01290) gspD 267391..269667 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  RBB55_RS01295 (RBB55_01295) - 269708..270337 (+) 630 WP_000219972.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=870723 RBB55_RS01275 WP_000801427.1 265112..265438(+) (hns) [Acinetobacter baumannii strain A207]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=870723 RBB55_RS01275 WP_000801427.1 265112..265438(+) (hns) [Acinetobacter baumannii strain A207]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1