Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   RBB55_RS00805 Genome accession   NZ_CP132915
Coordinates   168193..169347 (-) Length   384 a.a.
NCBI ID   WP_000755281.1    Uniprot ID   A0A059ZKS3
Organism   Acinetobacter baumannii strain A207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163193..174347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS00785 (RBB55_00785) - 164353..165003 (+) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  RBB55_RS00790 (RBB55_00790) - 165109..166029 (+) 921 WP_000084546.1 DMT family transporter -
  RBB55_RS00795 (RBB55_00795) - 166422..166991 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  RBB55_RS00800 (RBB55_00800) dprA 167042..168172 (-) 1131 WP_002124758.1 DNA-processing protein DprA Machinery gene
  RBB55_RS00805 (RBB55_00805) tsaP 168193..169347 (-) 1155 WP_000755281.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RBB55_RS00810 (RBB55_00810) def 169470..170000 (+) 531 WP_001196539.1 peptide deformylase -
  RBB55_RS00815 (RBB55_00815) - 170037..170465 (+) 429 WP_000231983.1 DUF2946 family protein -
  RBB55_RS00820 (RBB55_00820) - 170538..172625 (+) 2088 WP_377802908.1 TonB-dependent copper receptor -
  RBB55_RS00825 (RBB55_00825) - 172669..172875 (+) 207 WP_006582294.1 hypothetical protein -
  RBB55_RS00830 (RBB55_00830) - 172944..174158 (-) 1215 WP_006582293.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42350.28 Da        Isoelectric Point: 8.5816

>NTDB_id=870718 RBB55_RS00805 WP_000755281.1 168193..169347(-) (tsaP) [Acinetobacter baumannii strain A207]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=870718 RBB55_RS00805 WP_000755281.1 168193..169347(-) (tsaP) [Acinetobacter baumannii strain A207]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGGGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGTATTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTCTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZKS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.479

100

0.995