Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RA292_RS12125 Genome accession   NZ_CP132912
Coordinates   2382447..2383214 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2377447..2388214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS12105 ppsR 2377622..2378434 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  RA292_RS12110 ccpN 2378460..2379098 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  RA292_RS12115 glyS 2379231..2381270 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  RA292_RS12120 glyQ 2381263..2382150 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  RA292_RS12125 recO 2382447..2383214 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  RA292_RS12130 yqzL 2383251..2383394 (-) 144 WP_003230053.1 YqzL family protein -
  RA292_RS12135 era 2383542..2384447 (-) 906 WP_003230051.1 GTPase Era -
  RA292_RS12140 - 2384428..2384838 (-) 411 WP_003230049.1 cytidine deaminase -
  RA292_RS12145 unpK 2384957..2385328 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  RA292_RS12150 ybeY 2385309..2385782 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  RA292_RS12155 pgpH 2385783..2387918 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=870657 RA292_RS12125 WP_003230055.1 2382447..2383214(-) (recO) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=870657 RA292_RS12125 WP_003230055.1 2382447..2383214(-) (recO) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1