Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   RA292_RS11840 Genome accession   NZ_CP132912
Coordinates   2331490..2332527 (-) Length   345 a.a.
NCBI ID   WP_009967727.1    Uniprot ID   A0AAE2SM96
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2326490..2337527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS11790 tasA 2326588..2327373 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  RA292_RS11795 sipW 2327437..2328009 (-) 573 WP_003230181.1 signal peptidase I SipW -
  RA292_RS11800 tapA 2327993..2328754 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  RA292_RS11805 yqzG 2329026..2329352 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  RA292_RS11810 spoIITA 2329394..2329573 (-) 180 WP_003230176.1 YqzE family protein -
  RA292_RS11815 comGG 2329644..2330018 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  RA292_RS11820 comGF 2330019..2330402 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  RA292_RS11825 comGE 2330428..2330775 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  RA292_RS11830 comGD 2330759..2331190 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  RA292_RS11835 comGC 2331180..2331476 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  RA292_RS11840 comGB 2331490..2332527 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  RA292_RS11845 comGA 2332514..2333584 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  RA292_RS11850 - 2333795..2333920 (-) 126 WP_003230155.1 hypothetical protein -
  RA292_RS11855 corA 2333986..2334939 (-) 954 WP_032677123.1 magnesium transporter CorA -
  RA292_RS11860 yqhB 2335082..2336410 (+) 1329 WP_003230150.1 hemolysin family protein -
  RA292_RS11865 rsbRD 2336463..2337299 (-) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39762.26 Da        Isoelectric Point: 9.6257

>NTDB_id=870655 RA292_RS11840 WP_009967727.1 2331490..2332527(-) (comGB) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSLFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=870655 RA292_RS11840 WP_009967727.1 2331490..2332527(-) (comGB) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCTTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

100

93.623

0.936