Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RA292_RS10600 Genome accession   NZ_CP132912
Coordinates   2114287..2114907 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2109287..2119907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS10560 ptsA 2110418..2110924 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  RA292_RS10565 ypqA 2111062..2111481 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  RA292_RS10570 sppG 2111502..2111879 (-) 378 WP_004398696.1 YppG family protein -
  RA292_RS10575 yppF 2112067..2112255 (+) 189 WP_003230690.1 YppF family protein -
  RA292_RS10580 yppE 2112294..2112665 (-) 372 WP_003246080.1 YppE family protein -
  RA292_RS10585 yppD 2112711..2112956 (-) 246 WP_004398488.1 YppD family protein -
  RA292_RS10590 sspM 2113155..2113259 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  RA292_RS10595 yppC 2113284..2114246 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  RA292_RS10600 recU 2114287..2114907 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  RA292_RS10605 ponA 2114929..2117673 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  RA292_RS10610 ypoC 2117749..2118243 (-) 495 WP_009967579.1 YpoC family protein -
  RA292_RS10615 nth 2118240..2118899 (-) 660 WP_009967580.1 endonuclease III -
  RA292_RS10620 dnaD 2118918..2119616 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=870645 RA292_RS10600 WP_004399067.1 2114287..2114907(+) (recU) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=870645 RA292_RS10600 WP_004399067.1 2114287..2114907(+) (recU) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1