Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RA292_RS05630 Genome accession   NZ_CP132912
Coordinates   1112558..1113511 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1107558..1118511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS05605 argF 1109390..1110349 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  RA292_RS05610 yjzC 1110435..1110614 (+) 180 WP_003245356.1 YjzC family protein -
  RA292_RS05615 yjzD 1110660..1110845 (-) 186 WP_003245236.1 YjzD family protein -
  RA292_RS05620 - 1111094..1111828 (+) 735 WP_003245223.1 hypothetical protein -
  RA292_RS05625 - 1111910..1112467 (+) 558 WP_003232974.1 hypothetical protein -
  RA292_RS05630 med 1112558..1113511 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  RA292_RS05635 comZ 1113526..1113717 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  RA292_RS05640 yjzB 1113747..1113986 (-) 240 WP_003232972.1 spore coat protein YjzB -
  RA292_RS05645 fabH 1114151..1115089 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  RA292_RS05650 fabF 1115112..1116353 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  RA292_RS05655 yjaZ 1116429..1117214 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  RA292_RS05660 appD 1117406..1118392 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=870629 RA292_RS05630 WP_003245494.1 1112558..1113511(+) (med) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=870629 RA292_RS05630 WP_003245494.1 1112558..1113511(+) (med) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1