Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RA292_RS05175 Genome accession   NZ_CP132912
Coordinates   1023042..1023620 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018042..1028620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS20535 - 1018553..1019068 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  RA292_RS20540 - 1019309..1019935 (-) 627 Protein_974 protoglobin domain-containing protein -
  RA292_RS05160 comW 1019990..1021519 (-) 1530 WP_032730444.1 FAD-dependent oxidoreductase -
  RA292_RS05165 yhxC 1021631..1022488 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  RA292_RS05170 yhzC 1022516..1022749 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  RA292_RS05175 comK 1023042..1023620 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  RA292_RS05180 yhxD 1023667..1024566 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  RA292_RS05185 yhjA 1024783..1025052 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  RA292_RS05190 yhjB 1025095..1026564 (-) 1470 WP_003233134.1 sodium:solute symporter -
  RA292_RS05195 yhjC 1026561..1026761 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  RA292_RS05200 - 1026969..1027331 (-) 363 WP_003233132.1 hypothetical protein -
  RA292_RS05205 yhjE 1027483..1028106 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  RA292_RS05210 lepB 1028108..1028614 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=870626 RA292_RS05175 WP_003245329.1 1023042..1023620(+) (comK) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=870626 RA292_RS05175 WP_003245329.1 1023042..1023620(+) (comK) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1