Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RA292_RS04110 Genome accession   NZ_CP132912
Coordinates   831556..832350 (+) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 826556..837350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS04080 sxzA 827395..828426 (+) 1032 WP_003243057.1 iron chelate uptake ABC transporter family permease subunit -
  RA292_RS04085 yfhB 828541..829422 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  RA292_RS04090 yfhC 829510..830094 (+) 585 WP_003243940.1 nitroreductase -
  RA292_RS04095 yfhD 830133..830324 (-) 192 WP_003233561.1 YfhD family protein -
  RA292_RS04100 yfhE 830391..830501 (-) 111 WP_003223230.1 YfhE family protein -
  RA292_RS04105 yfhF 830556..831467 (-) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  RA292_RS04110 recX 831556..832350 (+) 795 WP_003243354.1 recombination regulator RecX Regulator
  RA292_RS04115 yfhH 832352..832666 (+) 315 WP_003244592.1 YfhH family protein -
  RA292_RS04120 yfhI 832809..834002 (+) 1194 WP_003243500.1 MFS transporter -
  RA292_RS04125 sspK 834035..834187 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  RA292_RS04130 yfhJ 834312..834581 (+) 270 WP_003243789.1 YfhJ family protein -
  RA292_RS04135 yfhK 834726..835244 (+) 519 WP_003243363.1 SH3 domain-containing protein -
  RA292_RS04140 spdL 835329..835661 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  RA292_RS04145 ephM 835648..836508 (+) 861 WP_003243419.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=870621 RA292_RS04110 WP_003243354.1 831556..832350(+) (recX) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=870621 RA292_RS04110 WP_003243354.1 831556..832350(+) (recX) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1