Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RA292_RS01485 Genome accession   NZ_CP132912
Coordinates   295920..296369 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 290920..301369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS01450 yckA 291188..291868 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  RA292_RS01455 yckB 291878..292741 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  RA292_RS01460 - 292903..293100 (+) 198 Protein_267 hypothetical protein -
  RA292_RS01465 - 293137..293457 (+) 321 Protein_268 RDD family protein -
  RA292_RS01470 yckD 293539..293871 (+) 333 WP_003246247.1 YckD family protein -
  RA292_RS01475 bglC 294025..295458 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  RA292_RS01480 nin/comJ 295495..295893 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  RA292_RS01485 nucA/comI 295920..296369 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  RA292_RS01490 tlpC 296537..298258 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  RA292_RS01495 hxlB 298369..298926 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  RA292_RS01500 hxlA 298932..299564 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  RA292_RS01505 hxlR 299797..300159 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=870610 RA292_RS01485 WP_003246436.1 295920..296369(-) (nucA/comI) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=870610 RA292_RS01485 WP_003246436.1 295920..296369(-) (nucA/comI) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1