Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RA292_RS00245 Genome accession   NZ_CP132912
Coordinates   44523..44813 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39523..49813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS00205 darA 39546..39875 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  RA292_RS00210 yaaR 39888..40328 (+) 441 WP_009966249.1 YaaR family protein -
  RA292_RS00215 holB 40340..41329 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  RA292_RS00220 ricT 41332..42159 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  RA292_RS00225 yabA 42174..42533 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  RA292_RS00230 trmNF 42592..43335 (+) 744 WP_003226765.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RA292_RS00235 yazA 43322..43621 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  RA292_RS00240 rsmI 43596..44474 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RA292_RS00245 abrB 44523..44813 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  RA292_RS00250 metG 45308..47302 (+) 1995 WP_003226758.1 methionine--tRNA ligase -
  RA292_RS00255 dayD 47381..48148 (+) 768 WP_003226756.1 TatD family hydrolase -
  RA292_RS00260 yabE 48304..49617 (+) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=870607 RA292_RS00245 WP_003226760.1 44523..44813(-) (abrB) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=870607 RA292_RS00245 WP_003226760.1 44523..44813(-) (abrB) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1