Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   WHU37_RS23195 Genome accession   NZ_CP148349
Coordinates   4666753..4667268 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain Z1323HEC0399     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4661753..4672268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU37_RS23150 (WHU37_23110) csrA 4662473..4662658 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  WHU37_RS23180 (WHU37_23140) yqaB 4663983..4664549 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  WHU37_RS23185 (WHU37_23145) yqaA 4664546..4664974 (+) 429 WP_001287453.1 YqaA family protein -
  WHU37_RS23190 (WHU37_23150) gshA 4665047..4666603 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  WHU37_RS23195 (WHU37_23155) luxS 4666753..4667268 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  WHU37_RS23200 (WHU37_23160) - 4667317..4668429 (-) 1113 Protein_4530 AAA family ATPase -
  WHU37_RS23205 (WHU37_23165) - 4668426..4669133 (-) 708 WP_001097117.1 RNA ligase family protein -
  WHU37_RS23210 (WHU37_23170) emrB 4669391..4670929 (-) 1539 WP_001400788.1 multidrug efflux MFS transporter permease subunit EmrB -
  WHU37_RS23215 (WHU37_23175) emrA 4670946..4672118 (-) 1173 WP_001400789.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=870596 WHU37_RS23195 WP_001130211.1 4666753..4667268(+) (luxS) [Escherichia coli strain Z1323HEC0399]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=870596 WHU37_RS23195 WP_001130211.1 4666753..4667268(+) (luxS) [Escherichia coli strain Z1323HEC0399]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731