Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | K6J91_RS13720 | Genome accession | NZ_AP024624 |
| Coordinates | 2618201..2618611 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain BEST3106 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2613567..2665057 | 2618201..2618611 | within | 0 |
Gene organization within MGE regions
Location: 2613567..2665057
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J91_RS13695 (BsBEST3106_26220) | yqeF | 2613734..2614465 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| K6J91_RS13700 (BsBEST3106_26230) | cwlH | 2614717..2615469 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| K6J91_RS13705 (BsBEST3106_26240) | yqeD | 2615656..2616282 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| K6J91_RS13710 (BsBEST3106_26250) | gnd | 2616301..2617194 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| K6J91_RS13715 (BsBEST3106_26260) | yqeB | 2617446..2618168 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| K6J91_RS13720 (BsBEST3106_26270) | nucA/comI | 2618201..2618611 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| K6J91_RS13725 (BsBEST3106_26280) | - | 2618807..2619157 (+) | 351 | Protein_2666 | sigma-70 family RNA polymerase sigma factor | - |
| K6J91_RS13730 (BsBEST3106_26290) | spoIVCA | 2619185..2620645 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| K6J91_RS22020 (BsBEST3106_26300) | - | 2620603..2620781 (-) | 179 | Protein_2668 | hypothetical protein | - |
| K6J91_RS13735 (BsBEST3106_26310) | arsC | 2621136..2621555 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| K6J91_RS13740 (BsBEST3106_26320) | acr3 | 2621567..2622607 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| K6J91_RS13745 (BsBEST3106_26330) | arsK | 2622630..2623070 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| K6J91_RS13750 (BsBEST3106_26340) | arsR | 2623131..2623448 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| K6J91_RS13755 (BsBEST3106_26350) | yqcI | 2623820..2624584 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| K6J91_RS13760 (BsBEST3106_26360) | rapE | 2625027..2626154 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| K6J91_RS13765 (BsBEST3106_26370) | phrE | 2626144..2626278 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| K6J91_RS13770 (BsBEST3106_26380) | - | 2626388..2626546 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| K6J91_RS13775 (BsBEST3106_26390) | yqcG | 2626916..2628511 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| K6J91_RS13780 (BsBEST3106_26400) | yqcF | 2628526..2629104 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| K6J91_RS13785 (BsBEST3106_26410) | - | 2629222..2629368 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| K6J91_RS13790 (BsBEST3106_26420) | - | 2629365..2629727 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| K6J91_RS13795 (BsBEST3106_26430) | - | 2629743..2630222 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| K6J91_RS13800 (BsBEST3106_26440) | cwlA | 2630387..2631205 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| K6J91_RS13805 (BsBEST3106_26450) | skhD | 2631250..2631672 (-) | 423 | WP_003246208.1 | holin family protein | - |
| K6J91_RS13810 (BsBEST3106_26460) | xepAK | 2631717..2632610 (-) | 894 | WP_003246010.1 | hypothetical protein | - |
| K6J91_RS13815 (BsBEST3106_26470) | yqcE | 2632698..2632862 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| K6J91_RS13820 (BsBEST3106_26480) | yqcD | 2632859..2633194 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| K6J91_RS13825 (BsBEST3106_26490) | yqcC | 2633204..2634304 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| K6J91_RS13830 (BsBEST3106_26500) | - | 2634307..2634579 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| K6J91_RS13835 (BsBEST3106_26510) | yqcA | 2634576..2635154 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| K6J91_RS13840 (BsBEST3106_26520) | yqbT | 2635138..2636184 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| K6J91_RS13845 (BsBEST3106_26530) | yqbS | 2636177..2636602 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| K6J91_RS13850 (BsBEST3106_26540) | yqbR | 2636615..2636878 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| K6J91_RS13855 (BsBEST3106_26550) | yqbQ | 2636875..2637855 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| K6J91_RS13860 (BsBEST3106_26560) | yqbP | 2637868..2638527 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| K6J91_RS13865 (BsBEST3106_26570) | yqbO | 2638520..2643277 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| K6J91_RS13870 (BsBEST3106_26580) | - | 2643280..2643417 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| K6J91_RS13875 (BsBEST3106_26590) | - | 2643459..2643908 (-) | 450 | WP_003229933.1 | phage tail assembly chaperone | - |
| K6J91_RS13880 (BsBEST3106_26600) | txpA | 2644054..2644233 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| K6J91_RS13885 | bsrH | 2644613..2644702 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| K6J91_RS13890 (BsBEST3106_26620) | yqbM | 2644956..2645399 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| K6J91_RS13895 (BsBEST3106_26630) | yqbK | 2645402..2646802 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| K6J91_RS13900 (BsBEST3106_26640) | - | 2646803..2646994 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| K6J91_RS13905 (BsBEST3106_26650) | yqbJ | 2646991..2647428 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| K6J91_RS13910 (BsBEST3106_26660) | yqbI | 2647441..2647944 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| K6J91_RS13915 (BsBEST3106_26670) | yqbH | 2647941..2648303 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| K6J91_RS13920 (BsBEST3106_26680) | gkpG | 2648300..2648695 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| K6J91_RS13925 (BsBEST3106_26690) | yqbF | 2648699..2649010 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| K6J91_RS13930 (BsBEST3106_26700) | skdG | 2649021..2649956 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| K6J91_RS13935 (BsBEST3106_26710) | yqbD | 2649975..2650943 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| K6J91_RS13940 (BsBEST3106_26720) | - | 2650976..2651629 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| K6J91_RS13945 (BsBEST3106_26730) | yqbB | 2651670..2652587 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| K6J91_RS13950 (BsBEST3106_26740) | yqbA | 2652584..2654116 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| K6J91_RS13955 (BsBEST3106_26750) | stmB | 2654120..2655415 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| K6J91_RS13960 (BsBEST3106_26760) | terS | 2655408..2656127 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| K6J91_RS13965 (BsBEST3106_26770) | - | 2656195..2656659 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| K6J91_RS13970 (BsBEST3106_26780) | yqaQ | 2656803..2657258 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| K6J91_RS13975 (BsBEST3106_26790) | - | 2657456..2658385 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| K6J91_RS13980 (BsBEST3106_26800) | yqaO | 2658459..2658665 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| K6J91_RS13985 (BsBEST3106_26810) | yqaN | 2658747..2659175 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| K6J91_RS13990 (BsBEST3106_26820) | - | 2659271..2659420 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| K6J91_RS13995 (BsBEST3106_26830) | sknM | 2659411..2660352 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| K6J91_RS14000 (BsBEST3106_26840) | yqaL | 2660234..2660911 (-) | 678 | WP_010886575.1 | DnaD domain-containing protein | - |
| K6J91_RS14005 (BsBEST3106_26850) | recT | 2660987..2661841 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| K6J91_RS14010 (BsBEST3106_26860) | yqaJ | 2661844..2662803 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| K6J91_RS14015 (BsBEST3106_26870) | - | 2662909..2663103 (-) | 195 | WP_003229905.1 | YqaI family protein | - |
| K6J91_RS14020 (BsBEST3106_26880) | - | 2663063..2663236 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| K6J91_RS14025 (BsBEST3106_26890) | sknH | 2663233..2663490 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| K6J91_RS14030 (BsBEST3106_26900) | yqaG | 2663487..2664056 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| K6J91_RS14035 (BsBEST3106_26910) | - | 2664130..2664270 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| K6J91_RS14040 (BsBEST3106_26920) | yqaF | 2664300..2664530 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| K6J91_RS14045 (BsBEST3106_26930) | sknR | 2664707..2665057 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=87047 K6J91_RS13720 WP_009967785.1 2618201..2618611(-) (nucA/comI) [Bacillus subtilis strain BEST3106]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=87047 K6J91_RS13720 WP_009967785.1 2618201..2618611(-) (nucA/comI) [Bacillus subtilis strain BEST3106]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |